Factsheet for GSMUA_Achr9P19380_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P10550_001	Banana	nucleus	49.19	49.35
GSMUA_Achr9P28330_001	Banana	nucleus	49.19	46.89
VIT_14s0083g00120.t01	Wine grape	nucleus	57.65	46.09
GSMUA_Achr9P03320_001	Banana	nucleus	37.78	42.03
GSMUA_Achr8P16920_001	Banana	nucleus	14.33	38.94
GSMUA_Achr5P29070_001	Banana	nucleus	49.51	25.85
GSMUA_Achr7P18080_001	Banana	nucleus	20.52	23.33
GSMUA_Achr2P22010_001	Banana	nucleus	19.22	23.32
GSMUA_Achr11P...	Banana	nucleus	18.89	23.11
GSMUA_Achr6P02690_001	Banana	nucleus	18.57	22.8
GSMUA_Achr3P09450_001	Banana	nucleus	20.85	22.15
GSMUA_Achr8P01400_001	Banana	nucleus	18.89	22.05
GSMUA_Achr7P21010_001	Banana	nucleus	19.22	21.93
GSMUA_Achr6P10700_001	Banana	nucleus	18.24	21.88
GSMUA_Achr4P00480_001	Banana	nucleus	18.24	21.13
GSMUA_AchrUn_...	Banana	nucleus	19.54	20.83
GSMUA_Achr9P17050_001	Banana	nucleus	18.89	20.79
GSMUA_Achr5P07720_001	Banana	nucleus	19.87	20.68
GSMUA_Achr10P...	Banana	nucleus	18.89	20.14
GSMUA_Achr10P...	Banana	nucleus	18.57	19.93
GSMUA_Achr10P...	Banana	nucleus	19.87	19.37
GSMUA_Achr7P21670_001	Banana	nucleus	17.59	18.69

Protein Annotations

EnsemblPlants:GSMUA_Achr9P19380_001	EnsemblPlants:GSMUA_Achr9T19380_001	EnsemblPlantsGene:GSMUA_Achr9G19380_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
ncoils:Coil	PANTHER:PTHR10641	PANTHER:PTHR10641:SF658	PFAM:PF13921	PFscan:PS51294	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002951F5F	UniProt:M0U1P5	MapMan:15.5.2.1	:

Description

Protein rough sheath 2 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr9G19380_001]

Coordinates

chr9:+:20003709..20004701

Molecular Weight (calculated)

35634.7 Da

IEP (calculated)

10.570

GRAVY (calculated)

-0.911

Length

307 amino acids

Sequence
(BLAST)

001: MRERQRWQPE EDELLREYVK QYGPKEWGMV SERMGRPLHR DPKSCHERWK NYLRPGLKKG SLTPEEQSLV ISLQARYGNK WKAIAAHLPG RTPKRLGKWW
101: EVFKEKQLKL ANQSGAGSGR HPAYEHILQT FAEKHALLRE PPLPIDHCSS PSPSSVLSSA TAAAPSVTLS LSPPRSPALA AHRVPIVVQM CQEVEEGRRA
201: WVQHRKEAAW RLSRLEQQME TEKARKKTEK VEEVEGKIRR LRDEERSRLE RVEREWREKV TQLRTEAEAE EAKMAEAWAR KQAKLATLIR RIAGDSARFF
301: SFSCNVR

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.