Factsheet for GSMUA_Achr5P29070_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P17160_001
GSMUA_Achr2P18060_001
GSMUA_Achr4P19000_001
GSMUA_Achr5P14120_001
GSMUA_Achr6P04670_001
GSMUA_Achr8P14660_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G37630.1	GSMUA_Achr11P...	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr2P18060_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr4P19000_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr5P14120_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_Achr8P14660_001	AT1G32230.1	19548978
AT2G37630.1	GSMUA_AchrUn_...	AT3G29390.1	16243907
AT2G37630.1	GSMUA_Achr2P17160_001	AT5G66870.1	16243907
AT2G37630.1	GSMUA_Achr6P04670_001	AT5G66870.1	16243907

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03320_001	Banana	nucleus	35.03	74.64
GSMUA_Achr9P28330_001	Banana	nucleus	38.61	70.5
GSMUA_Achr7P10550_001	Banana	nucleus	36.56	70.26
HORVU7Hr1G077530.1	Barley	mitochondrion, nucleus	19.22	68.07
VIT_08s0007g00410.t01	Wine grape	nucleus	39.12	64.25
KRG99949	Soybean	nucleus	38.61	63.59
KRH49100	Soybean	nucleus	38.44	62.6
TraesCS5A01G079100.1	Wheat	nucleus	36.39	62.39
Bra000011.1-P	Field mustard	nucleus	36.73	62.25
CDY07778	Canola	nucleus	36.73	62.25
Solyc09g010840.1.1	Tomato	nucleus	37.59	61.39
KRG99521	Soybean	nucleus	36.56	61.08
PGSC0003DMT400022771	Potato	nucleus	37.41	60.94
CDX79747	Canola	nucleus	35.71	60.34
KRH66092	Soybean	nucleus	36.56	60.22
CDX91374	Canola	nucleus	36.22	59.66
Os12t0572000-01	Rice	nucleus	34.69	59.65
TraesCS5D01G093100.1	Wheat	mitochondrion, nucleus	36.56	59.56
TraesCS5B01G086900.1	Wheat	mitochondrion, nucleus	36.56	59.23
Bra005177.1-P	Field mustard	nucleus	36.22	59.0
HORVU5Hr1G021230.1	Barley	mitochondrion, nucleus	36.22	58.84
CDX74943	Canola	nucleus	36.39	58.47
AT2G37630.1	Thale cress	nucleus	36.05	57.77
Zm00001d030737_P001	Maize	nucleus	35.88	57.03
EES17234	Sorghum	nucleus	36.05	55.64
GSMUA_Achr9P19380_001	Banana	nucleus	25.85	49.51
HORVU5Hr1G112000.2	Barley	extracellular, nucleus	19.22	38.31
GSMUA_Achr8P16920_001	Banana	nucleus	6.8	35.4
HORVU6Hr1G071420.2	Barley	plastid	9.01	28.8
GSMUA_Achr11P...	Banana	nucleus	11.05	25.9
GSMUA_Achr4P00480_001	Banana	nucleus	10.88	24.15
GSMUA_Achr7P21010_001	Banana	nucleus	10.71	23.42
GSMUA_Achr6P02690_001	Banana	nucleus	9.86	23.2
GSMUA_Achr7P18080_001	Banana	nucleus	10.54	22.96
GSMUA_Achr6P10700_001	Banana	nucleus	9.86	22.66
GSMUA_Achr8P01400_001	Banana	nucleus	10.03	22.43
GSMUA_Achr5P07720_001	Banana	nucleus	11.22	22.37
GSMUA_Achr3P09450_001	Banana	nucleus	10.88	22.15
GSMUA_Achr2P22010_001	Banana	nucleus	9.52	22.13
GSMUA_Achr10P...	Banana	nucleus	10.71	21.88
GSMUA_Achr9P17050_001	Banana	nucleus	10.2	21.51
GSMUA_Achr10P...	Banana	nucleus	10.37	21.33
GSMUA_Achr10P...	Banana	nucleus	11.22	20.95
GSMUA_AchrUn_...	Banana	nucleus	10.2	20.83
GSMUA_Achr7P21670_001	Banana	nucleus	10.2	20.76

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009987	GO:GO:0010338	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr5G29070_001	EnsemblPlants:GSMUA_Achr5P29070_001
EnsemblPlants:GSMUA_Achr5T29070_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0T2N1	InterPro:Myb_dom	PFAM:PF13921
PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF457	InterPro:RS2/AS1	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TMHMM:TMhelix	UniParc:UPI0002960C98	SEG:seg	:	:

Description

Transcription factor AS1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G29070_001]

Coordinates

chr5:+:28955095..28964168

Molecular Weight (calculated)

66475.1 Da

IEP (calculated)

11.554

GRAVY (calculated)

-0.733

Length

588 amino acids

Sequence
(BLAST)

001: MKDRQRWRAE EDAILRAYVK QYGPREWNLV SQRMNVALNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTPKRLGKWW
101: EVFKEKQQRQ QNESNKAATS PAEPAKYDRI LENFAEKLVR ERRGVPLLMA APFLPLWLSN NGGSHGPPSP SVTLTLSSST KGMALGVSGS VVVDGHIMTE
201: LVECCREVEE GHRAWMEQKK EAAWRMKRLE LQLESEKTGK RREKMEEIEA KVRALREEQQ AALERIEAEY GEQIARLRKD AEAKEQKVAE QWAAKHVRLS
301: RFLDQVGYRQ WPPAETHGRR VRGRRARRRN HRLRPHRRGL RRSPGHRAAA VFAGGPQGGG APLPRAPLLL PPRLPRVHRQ PRPAHARHRG HRRRPLYPQH
401: HACQRLGGHR HRRGPGVHHA HRVRPEPGGR IRRLQGATAE GDLPGGDQRS DAGGSRCAAA GGGGGSPAAG GRGLGHAAGE AVVAAGPQRG AYVRGGRPRW
501: GCRVLYSVAL SNAAAVNLWI ILKTLVFNTL YDLVYVMVFR ESNLIADLTW WIWFFFTFSF FFPSFSRLSK QVQSKGLLKF QSTGKSAS

Best Arabidopsis Sequence Match ( AT2G37630.1 )
(BLAST)

001: MKERQRWSGE EDALLRAYVR QFGPREWHLV SERMNKPLNR DAKSCLERWK NYLKPGIKKG SLTEEEQRLV IRLQEKHGNK WKKIAAEVPG RTAKRLGKWW
101: EVFKEKQQRE EKESNKRVEP IDESKYDRIL ESFAEKLVKE RSNVVPAAAA AATVVMANSN GGFLHSEQQV QPPNPVIPPW LATSNNGNNV VARPPSVTLT
201: LSPSTVAAAA PQPPIPWLQQ QQPERAENGP GGLVLGSMMP SCSGSSESVF LSELVECCRE LEEGHRAWAD HKKEAAWRLR RLELQLESEK TCRQREKMEE
301: IEAKMKALRE EQKNAMEKIE GEYREQLVGL RRDAEAKDQK LADQWTSRHI RLTKFLEQQM GCRLDRP

Arabidopsis Description

AS1Transcription factor AS1 [Source:UniProtKB/Swiss-Prot;Acc:O80931]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.