Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 59.82 | 63.27 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 62.18 | 59.48 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 39.82 | 52.27 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 52.73 | 51.24 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 42.18 | 40.77 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 42.91 | 40.76 |
| EER90487 | Sorghum | nucleus | 41.82 | 40.14 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 41.64 | 39.62 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 41.64 | 39.62 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 42.0 | 39.22 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 42.18 | 39.19 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 41.82 | 38.85 |
| Os10t0577800-01 | Rice | nucleus | 41.09 | 38.24 |
| KXG38822 | Sorghum | nucleus | 40.91 | 37.82 |
| Os03t0854800-03 | Rice | nucleus | 39.64 | 37.33 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 40.18 | 37.08 |
| Zm00001d014423_P002 | Maize | nucleus | 41.09 | 36.87 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 40.73 | 36.78 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 40.18 | 33.69 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 35.27 | 33.62 |
| PGSC0003DMT400038368 | Potato | nucleus | 34.91 | 32.6 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 31.45 | 32.46 |
| CDY60257 | Canola | cytosol | 19.27 | 32.42 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 36.55 | 32.26 |
| GSMUA_Achr5P03800_001 | Banana | cytosol | 9.82 | 31.76 |
| Solyc08g005270.2.1 | Tomato | nucleus | 34.36 | 31.5 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 33.09 | 31.22 |
| Solyc08g076420.2.1 | Tomato | nucleus | 33.82 | 31.16 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 32.73 | 30.87 |
| CDY67026 | Canola | nucleus | 28.91 | 28.91 |
| Bra023252.1-P | Field mustard | nucleus | 25.09 | 28.63 |
| CDY22597 | Canola | nucleus | 28.18 | 28.49 |
| CDY32124 | Canola | nucleus | 27.45 | 28.49 |
| Bra017317.1-P | Field mustard | nucleus | 27.09 | 28.11 |
| AT1G32230.1 | Thale cress | nucleus | 29.82 | 27.84 |
| Bra035511.1-P | Field mustard | cytosol | 28.18 | 27.78 |
| CDY43007 | Canola | nucleus | 28.73 | 27.19 |
| AT2G35510.3 | Thale cress | cytosol | 28.0 | 27.11 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 25.82 | 27.1 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 24.18 | 26.98 |
| PGSC0003DMT400043197 | Potato | nucleus | 28.91 | 26.77 |
| CDY31694 | Canola | nucleus | 25.45 | 26.52 |
| CDY41739 | Canola | cytosol | 26.18 | 26.18 |
| GSMUA_Achr4P27510_001 | Banana | cytosol | 13.64 | 26.04 |
| Solyc06g066330.2.1 | Tomato | nucleus | 27.82 | 25.76 |
| GSMUA_Achr7P27570_001 | Banana | cytosol, nucleus, plastid | 16.36 | 23.56 |
| GSMUA_Achr5P08960_001 | Banana | mitochondrion, nucleus | 20.0 | 23.06 |
| KRH74373 | Soybean | mitochondrion | 18.36 | 21.17 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P14660_001 | EnsemblPlants:GSMUA_Achr8T14660_001 | EnsemblPlantsGene:GSMUA_Achr8G14660_001 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003950 | GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 |
| PANTHER:PTHR32263:SF4 | PFAM:PF12174 | PFscan:PS51059 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI000294B749 |
| UniProt:M0TQG9 | MapMan:35.1 | : | : | : | : |
Description
RCD1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G14660_001]
Coordinates
chr8:+:12033505..12040001
Molecular Weight (calculated)
61722.2 Da
IEP (calculated)
8.354
GRAVY (calculated)
-0.426
Length
550 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQMNVKALD KGEKHDLKRK RDPALYFTDV GQGLVGCSDH LIPGQSSRRV SITKGCKTNL GCHPETHILK NYYNFTKSGL PKRVLAYENG EWKDFPENIV
101: SLVQEDFRSK KAITEAGFRN QQLLLDYIYM ICIVLETGLV YMNPDANRKH ETNDHFEISI SAAESSSSRP DDEAMSNVKR VKSEKNSASD CNIYVEVNEA
201: VGENESGSAL PSNVRASRIC QAPASGCQVN RAVQEMLLQG LGKLIDAKDI LGILRTPLRN DLGQVRFNLF QEQVEIAKKV RGNANVRYAW LASSKDAVEG
301: MMLHGTLTRP EQKCLYGNGI HLAPANCSKI CASYSDVDEN GVIHLMLCRI IMGNAELIYP GSNQCQPSNE NFDTGVDDLQ KPTHYIIWDM NMYTHIYAEY
401: IVTFKVTSKL KEWLVGKESK SNVSALTNSG SPHSLLQDKA FQPSLAFGNK AQAPVSRTMP RIPTSPWMPF SMLFAAISTK VPPEDMDLVH TQYDEFKKGK
501: ISRIDLVKKL RQIIGDKLLV STIMRLQHKL PPMARREPPK CWSHNLPHES
101: SLVQEDFRSK KAITEAGFRN QQLLLDYIYM ICIVLETGLV YMNPDANRKH ETNDHFEISI SAAESSSSRP DDEAMSNVKR VKSEKNSASD CNIYVEVNEA
201: VGENESGSAL PSNVRASRIC QAPASGCQVN RAVQEMLLQG LGKLIDAKDI LGILRTPLRN DLGQVRFNLF QEQVEIAKKV RGNANVRYAW LASSKDAVEG
301: MMLHGTLTRP EQKCLYGNGI HLAPANCSKI CASYSDVDEN GVIHLMLCRI IMGNAELIYP GSNQCQPSNE NFDTGVDDLQ KPTHYIIWDM NMYTHIYAEY
401: IVTFKVTSKL KEWLVGKESK SNVSALTNSG SPHSLLQDKA FQPSLAFGNK AQAPVSRTMP RIPTSPWMPF SMLFAAISTK VPPEDMDLVH TQYDEFKKGK
501: ISRIDLVKKL RQIIGDKLLV STIMRLQHKL PPMARREPPK CWSHNLPHES
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.