Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P27570_001 | Banana | cytosol, nucleus, plastid | 38.36 | 47.91 |
| TraesCS4D01G236400.2 | Wheat | nucleus | 35.43 | 38.5 |
| TraesCS4A01G059400.1 | Wheat | nucleus | 35.43 | 38.5 |
| TraesCS4B01G235000.1 | Wheat | nucleus | 35.22 | 38.27 |
| Os03t0230300-01 | Rice | nucleus | 35.01 | 36.07 |
| EER92605 | Sorghum | nucleus | 33.12 | 35.19 |
| Zm00001d028307_P001 | Maize | nucleus | 31.66 | 35.03 |
| Zm00001d047993_P001 | Maize | cytosol, nucleus, plastid | 32.7 | 34.82 |
| HORVU4Hr1G065800.1 | Barley | nucleus, plastid | 35.22 | 32.5 |
| Solyc04g077070.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 14.68 | 32.41 |
| Solyc01g057370.1.1 | Tomato | nucleus | 20.75 | 31.43 |
| Solyc04g077080.1.1 | Tomato | cytosol | 23.69 | 30.79 |
| GSMUA_Achr5P03800_001 | Banana | cytosol | 10.48 | 29.41 |
| Solyc01g057360.1.1 | Tomato | cytosol | 18.87 | 29.22 |
| VIT_18s0001g08290.t01 | Wine grape | plastid | 29.56 | 29.07 |
| PGSC0003DMT400093081 | Potato | nucleus | 11.11 | 28.04 |
| Solyc04g077100.2.1 | Tomato | plastid | 25.37 | 27.88 |
| Solyc04g077090.1.1 | Tomato | cytosol | 25.79 | 27.77 |
| PGSC0003DMT400012724 | Potato | cytosol, nucleus, plastid | 29.56 | 27.65 |
| PGSC0003DMT400012725 | Potato | cytosol | 23.9 | 27.34 |
| GSMUA_Achr4P27510_001 | Banana | cytosol | 16.35 | 27.08 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 20.13 | 22.91 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 26.21 | 22.08 |
| GSMUA_Achr11P... | Banana | nucleus | 23.69 | 21.73 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 25.16 | 20.87 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 23.06 | 20.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P08960_001 | EnsemblPlants:GSMUA_Achr5T08960_001 | EnsemblPlantsGene:GSMUA_Achr5G08960_001 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003950 | GO:GO:0016740 | InterPro:IPR004170 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST |
| InterPro:WWE-dom | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF5 | PFAM:PF12174 | PFscan:PS50918 | PFscan:PS51059 |
| SEG:seg | SUPFAM:SSF56399 | UniParc:UPI0002963519 | UniProt:M0SWX5 | MapMan:35.1 | : |
Description
ATP8, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G08960_001]
Coordinates
chr5:+:6525114..6526831
Molecular Weight (calculated)
52649.2 Da
IEP (calculated)
9.297
GRAVY (calculated)
-0.457
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQRRQHLAP LPSDPVCSSD SFRVPSMAKS NAHLLIPRTA DGTSPAIAGF GTTKNFAEPP PPVPPSTTSV QESKNLKKSG GPARFLLFRG GSWIDFPPEV
101: LDVLRDGLDA GRMALEVPVG GTSYLFDFLR MTRVDLKDGV SSSIGWIDAD GRCFFPRVLL DGQRNSSSLD KGREGSSELH QEHSDETPET STTTSLDQPR
201: EWPGAETLSD GDRHYKVVEK LFLDGMRRFD PNVTITSVRK CLHSSFRGNS RLEAFQTLIQ TTKAARGHEN VRFGWYGTTA SDLAVVIGHG FGRTNNSLLG
301: SHAHGVGVHL SPPHSPHSSS TLSEVDSNGD RHILLCRAIM GKSEKVEAGS LQYHPSSDEF DSGVDDLTTP KWYIVWSTHM NAHILPEYIV SFRSSCHQSQ
401: GHGRRMSSRR RPSISSTSFS KLFAEIAKLL PSSMSAILGI KYNQFREGKI SKESFIRYLR STVGDKLLIS TIRKMYS
101: LDVLRDGLDA GRMALEVPVG GTSYLFDFLR MTRVDLKDGV SSSIGWIDAD GRCFFPRVLL DGQRNSSSLD KGREGSSELH QEHSDETPET STTTSLDQPR
201: EWPGAETLSD GDRHYKVVEK LFLDGMRRFD PNVTITSVRK CLHSSFRGNS RLEAFQTLIQ TTKAARGHEN VRFGWYGTTA SDLAVVIGHG FGRTNNSLLG
301: SHAHGVGVHL SPPHSPHSSS TLSEVDSNGD RHILLCRAIM GKSEKVEAGS LQYHPSSDEF DSGVDDLTTP KWYIVWSTHM NAHILPEYIV SFRSSCHQSQ
401: GHGRRMSSRR RPSISSTSFS KLFAEIAKLL PSSMSAILGI KYNQFREGKI SKESFIRYLR STVGDKLLIS TIRKMYS
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQPK SKEIPGSIRD HEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQPK SKEIPGSIRD HEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.