Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P14120_001 | Banana | nucleus | 58.47 | 43.29 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 52.27 | 39.82 |
| GSMUA_Achr11P... | Banana | nucleus | 48.21 | 38.85 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 49.64 | 36.17 |
| CDY60257 | Canola | cytosol | 25.54 | 32.72 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 40.81 | 30.05 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 41.05 | 29.71 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 40.33 | 29.24 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 39.86 | 28.89 |
| GSMUA_Achr5P03800_001 | Banana | cytosol | 11.69 | 28.82 |
| Os10t0577800-01 | Rice | nucleus | 40.57 | 28.76 |
| EER90487 | Sorghum | nucleus | 38.9 | 28.45 |
| Os03t0854800-03 | Rice | nucleus | 38.66 | 27.74 |
| KXG38822 | Sorghum | nucleus | 39.14 | 27.56 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 38.42 | 27.33 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 38.42 | 27.2 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 38.42 | 27.2 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 38.19 | 26.85 |
| Zm00001d014423_P002 | Maize | nucleus | 38.19 | 26.1 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 32.94 | 25.89 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 37.47 | 25.78 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 35.32 | 25.65 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 38.19 | 24.39 |
| PGSC0003DMT400038368 | Potato | nucleus | 33.89 | 24.11 |
| Solyc08g005270.2.1 | Tomato | nucleus | 34.37 | 24.0 |
| Solyc08g076420.2.1 | Tomato | nucleus | 33.89 | 23.79 |
| CDY22597 | Canola | nucleus | 30.79 | 23.71 |
| CDY67026 | Canola | nucleus | 31.03 | 23.64 |
| GSMUA_Achr4P27510_001 | Banana | cytosol | 15.99 | 23.26 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 34.13 | 22.95 |
| CDY32124 | Canola | nucleus | 28.88 | 22.83 |
| Bra035511.1-P | Field mustard | cytosol | 30.31 | 22.76 |
| CDY31694 | Canola | nucleus | 28.64 | 22.73 |
| Bra017317.1-P | Field mustard | nucleus | 28.64 | 22.64 |
| AT1G32230.1 | Thale cress | nucleus | 31.74 | 22.58 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 28.16 | 22.52 |
| Bra023252.1-P | Field mustard | nucleus | 25.54 | 22.2 |
| AT2G35510.3 | Thale cress | cytosol | 29.83 | 22.01 |
| CDY41739 | Canola | cytosol | 28.16 | 21.45 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 29.83 | 21.44 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 25.06 | 21.3 |
| CDY43007 | Canola | nucleus | 29.36 | 21.17 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 29.36 | 21.1 |
| GSMUA_Achr5P08960_001 | Banana | mitochondrion, nucleus | 22.91 | 20.13 |
| PGSC0003DMT400043197 | Potato | nucleus | 28.16 | 19.87 |
| Solyc06g066330.2.1 | Tomato | nucleus | 27.68 | 19.53 |
| GSMUA_Achr7P27570_001 | Banana | cytosol, nucleus, plastid | 16.47 | 18.06 |
| KRH74373 | Soybean | mitochondrion | 13.13 | 11.53 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P19000_001 | EnsemblPlants:GSMUA_Achr4T19000_001 | EnsemblPlantsGene:GSMUA_Achr4G19000_001 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003950 | GO:GO:0016740 | GO:GO:0016757 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST |
| PANTHER:PTHR32263 | PANTHER:PTHR32263:SF10 | PFAM:PF00644 | PFAM:PF12174 | PFscan:PS51059 | SEG:seg |
| SUPFAM:SSF56399 | UniParc:UPI0002948697 | UniProt:M0SQ63 | MapMan:35.1 | : | : |
Description
RCD1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G19000_001]
Coordinates
chr4:+:20040374..20043996
Molecular Weight (calculated)
46395.9 Da
IEP (calculated)
7.568
GRAVY (calculated)
-0.350
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MICDPNGTHE IDARLEISVS AAESSSSGSD DEVMSNVKRI KREEHTLCAQ GNETVGENEP CPFLPSDISA LESWQEKKVR PTGDPRVSAV LDLLLKSLGQ
101: VIDAKDILRI LKTPAKNDLG MVRFSLFQEQ AMVTQKVRGN ANVRYAWLST SKDVVEEVMS KGVLKKPIQK PAFGNGIHLA PANCSNIRAS CSDIDENGVV
201: HMMLCRVIMG NMELIPMGSM QHQPSHENFD SGIDDIQNPK RYITWDLNMH THIYAEYIVT LNLPTNAKEG LVREASISNV SALTNSYSPH SLFQDKCQPS
301: PVVGNQSTGL LSGRAPKTPT SPWMPFSMLF AAISTKVLPE DMDLVNTHYE DFKKKKISRI DLIKKLRQIV GDKLLVSTIM RLQHTLPPMA RHPPPKSWST
401: ELQNKPGNGG SPSLFPGWC
101: VIDAKDILRI LKTPAKNDLG MVRFSLFQEQ AMVTQKVRGN ANVRYAWLST SKDVVEEVMS KGVLKKPIQK PAFGNGIHLA PANCSNIRAS CSDIDENGVV
201: HMMLCRVIMG NMELIPMGSM QHQPSHENFD SGIDDIQNPK RYITWDLNMH THIYAEYIVT LNLPTNAKEG LVREASISNV SALTNSYSPH SLFQDKCQPS
301: PVVGNQSTGL LSGRAPKTPT SPWMPFSMLF AAISTKVLPE DMDLVNTHYE DFKKKKISRI DLIKKLRQIV GDKLLVSTIM RLQHTLPPMA RHPPPKSWST
401: ELQNKPGNGG SPSLFPGWC
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.