Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023252.1-P | Field mustard | nucleus | 59.93 | 73.24 |
| CDY43007 | Canola | nucleus | 71.99 | 72.98 |
| CDY22597 | Canola | nucleus | 67.23 | 72.79 |
| CDY67026 | Canola | nucleus | 67.74 | 72.55 |
| Bra035511.1-P | Field mustard | cytosol | 67.4 | 71.15 |
| CDY60257 | Canola | cytosol | 38.71 | 69.72 |
| CDY41739 | Canola | cytosol | 61.8 | 66.18 |
| AT2G35510.3 | Thale cress | cytosol | 52.97 | 54.93 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 35.99 | 39.77 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 38.54 | 38.94 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 38.54 | 38.94 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 39.22 | 37.08 |
| Solyc08g005270.2.1 | Tomato | nucleus | 37.69 | 37.0 |
| PGSC0003DMT400038368 | Potato | nucleus | 35.48 | 35.48 |
| GSMUA_Achr11P... | Banana | nucleus | 28.86 | 32.69 |
| PGSC0003DMT400043197 | Potato | nucleus | 32.09 | 31.82 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 22.58 | 31.74 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 30.05 | 31.27 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 27.84 | 29.82 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 28.01 | 28.7 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 27.33 | 28.3 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 28.35 | 28.21 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 28.35 | 28.21 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 27.67 | 28.2 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 27.5 | 27.98 |
| KRH74373 | Soybean | mitochondrion | 22.58 | 27.88 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 27.84 | 27.84 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 27.16 | 27.68 |
| Os10t0577800-01 | Rice | nucleus | 27.5 | 27.41 |
| AT1G23550.1 | Thale cress | nucleus | 14.94 | 27.24 |
| KXG38822 | Sorghum | nucleus | 27.5 | 27.23 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 28.01 | 27.09 |
| EER90487 | Sorghum | nucleus | 25.98 | 26.7 |
| Zm00001d014423_P002 | Maize | nucleus | 26.99 | 25.94 |
| AT1G70440.1 | Thale cress | cytoskeleton, cytosol, nucleus | 13.24 | 25.57 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 25.81 | 25.5 |
| AT5G62520.1 | Thale cress | nucleus | 13.24 | 25.24 |
| Os03t0854800-03 | Rice | nucleus | 24.96 | 25.17 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 23.26 | 23.74 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 25.81 | 23.17 |
| AT3G47720.1 | Thale cress | nucleus | 12.22 | 22.78 |
Protein Annotations
| Gene3D:3.90.228.10 | MapMan:35.1 | PDB:5N9Q | PDB:5NGO | EntrezGene:840115 | ProteinID:AAG23444.1 |
| ProteinID:AAS91732.1 | ProteinID:AEE31452.1 | ProteinID:AEE31453.1 | EMBL:AF317898 | EMBL:AJ251578 | ProteinID:ANM57850.1 |
| ProteinID:ANM57851.1 | ProteinID:ANM57852.1 | ArrayExpress:AT1G32230 | EnsemblPlantsGene:AT1G32230 | RefSeq:AT1G32230 | TAIR:AT1G32230 |
| RefSeq:AT1G32230-TAIR-G | EnsemblPlants:AT1G32230.1 | TAIR:AT1G32230.1 | EMBL:AY059796 | EMBL:AY075633 | EMBL:AY142655 |
| Unigene:At.10171 | Symbol:AtRCD1 | ProteinID:CCH26550.1 | ProteinID:CCH26551.1 | ProteinID:CCH26553.1 | ProteinID:CCH26554.1 |
| ProteinID:CCH26556.1 | ProteinID:CCH26558.1 | ProteinID:CCH26560.1 | ProteinID:CCH26562.1 | ProteinID:CCH26563.1 | ProteinID:CCH26565.1 |
| ProteinID:CCH26567.1 | GO:GO:0000003 | GO:GO:0000303 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006809 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 | GO:GO:0009058 | GO:GO:0009414 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009653 | GO:GO:0009719 |
| GO:GO:0009723 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009816 | GO:GO:0009867 |
| GO:GO:0009873 | GO:GO:0009987 | GO:GO:0010102 | GO:GO:0010193 | GO:GO:0012501 | GO:GO:0016032 |
| GO:GO:0016363 | GO:GO:0016740 | GO:GO:0016757 | GO:GO:2000377 | InterPro:IPR004170 | InterPro:IPR012317 |
| UniProt:M5BF30 | RefSeq:NP_001320330.1 | RefSeq:NP_001320331.1 | RefSeq:NP_001320332.1 | RefSeq:NP_564391.1 | RefSeq:NP_849739.1 |
| PFAM:PF00644 | PFAM:PF12174 | PO:PO:0000003 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50918 | PFscan:PS51059 | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF4 | InterPro:Poly(ADP-ribose)pol_cat_dom |
| UniProt:Q8RY59 | Symbol:RCD1 | InterPro:RST | SUPFAM:SSF56399 | UniParc:UPI00000A133F | InterPro:WWE-dom |
| SEG:seg | : | : | : | : | : |
Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
Coordinates
chr1:+:11612118..11616218
Molecular Weight (calculated)
65700.2 Da
IEP (calculated)
6.457
GRAVY (calculated)
-0.477
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.