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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400007050
PGSC0003DMT400013624
PGSC0003DMT400015830
PGSC0003DMT400022771
PGSC0003DMT400027579
PGSC0003DMT400031184
PGSC0003DMT400036757
PGSC0003DMT400037405
PGSC0003DMT400044878
PGSC0003DMT400049592
PGSC0003DMT400058653
PGSC0003DMT400063187
PGSC0003DMT400066807
PGSC0003DMT400069498
PGSC0003DMT400072644
PGSC0003DMT400074143

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G32230.1 PGSC0003DMT400069498 AT1G06040.1 11018516
AT1G32230.1 PGSC0003DMT400069498 AT1G06040.1 19548978
AT1G32230.1 PGSC0003DMT400063187 AT1G74890.1 19548978
AT1G32230.1 PGSC0003DMT400027579 AT2G01980.1 17023541
AT1G32230.1 PGSC0003DMT400058653 AT2G01980.1 17023541
AT1G32230.1 PGSC0003DMT400015830 AT2G16770.1 19548978
AT1G32230.1 PGSC0003DMT400031184 AT2G16770.1 19548978
AT1G32230.1 PGSC0003DMT400036757 AT2G33550.1 19548978
AT1G32230.1 PGSC0003DMT400022771 AT2G37630.1 19548978
AT1G32230.1 PGSC0003DMT400066807 AT4G00050.1 19548978
AT1G32230.1 PGSC0003DMT400007050 AT5G03760.1 19548978
AT1G32230.1 PGSC0003DMT400072644 AT5G03760.1 19548978
AT1G32230.1 PGSC0003DMT400013624 AT5G48250.1 19548978
AT1G32230.1 PGSC0003DMT400044878 AT5G48250.1 19548978
AT1G32230.1 PGSC0003DMT400074143 AT5G48250.1 19548978
AT1G32230.1 PGSC0003DMT400037405 AT5G54680.1 19548978
AT1G32230.1 PGSC0003DMT400049592 AT5G54680.1 19548978
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc08g076420.2.1 Tomato nucleus 89.47 88.27
PGSC0003DMT400043197 Potato nucleus 47.37 46.97
VIT_02s0012g01920.t01 Wine grape cytosol 38.03 42.03
CDY60257 Canola cytosol 22.07 39.76
KRH74370 Soybean mitochondrion, nucleus, plastid 38.37 38.77
KRH39574 Soybean mitochondrion, nucleus, plastid 38.03 38.42
VIT_02s0012g01930.t01 Wine grape nucleus 40.24 38.04
CDY22597 Canola nucleus 33.62 36.4
Bra023252.1-P Field mustard nucleus 29.71 36.31
CDY32124 Canola nucleus 32.6 36.23
Bra017317.1-P Field mustard nucleus 32.6 36.23
GSMUA_Achr11P... Banana nucleus 31.92 36.15
Bra005336.1-P Field mustard cytosol, nucleus, plastid 31.75 35.69
Bra035511.1-P Field mustard cytosol 33.79 35.66
AT1G32230.1 Thale cress nucleus 35.48 35.48
CDY67026 Canola nucleus 33.11 35.45
AT2G35510.3 Thale cress cytosol 34.13 35.39
GSMUA_Achr2P18060_001 Banana nucleus 34.13 34.96
GSMUA_Achr8P14660_001 Banana cytosol, endoplasmic reticulum, nucleus 32.6 34.91
CDY31694 Canola nucleus 31.24 34.85
CDX84199 Canola cytosol, nucleus, plastid 28.86 34.48
GSMUA_Achr4P19000_001 Banana nucleus 24.11 33.89
CDY43007 Canola nucleus 32.6 33.05
CDY41739 Canola cytosol 30.39 32.55
GSMUA_Achr5P14120_001 Banana nucleus 31.24 32.51
TraesCS4A01G321300.1 Wheat nucleus 30.05 31.11
HORVU5Hr1G124010.1 Barley nucleus 30.56 31.09
TraesCS1A01G195400.4 Wheat cytosol 31.07 30.91
TraesCS1D01G199200.1 Wheat cytosol, nucleus, plastid 30.9 30.74
TraesCS1B01G210300.4 Wheat peroxisome 30.56 30.56
Os10t0577800-01 Rice nucleus 30.56 30.46
TraesCS5D01G551800.3 Wheat nucleus 29.37 29.93
TraesCS5B01G557500.2 Wheat nucleus 29.2 29.76
KRH74373 Soybean mitochondrion 23.77 29.35
HORVU1Hr1G050960.7 Barley nucleus 30.22 29.23
KXG38822 Sorghum nucleus 29.03 28.74
PGSC0003DMT400035039 Potato cytosol 14.6 28.67
Os03t0854800-03 Rice nucleus 28.35 28.6
Zm00001d030110_P001 Maize mitochondrion, nucleus 28.86 28.52
EER90487 Sorghum nucleus 27.33 28.1
Zm00001d014423_P002 Maize nucleus 28.69 27.57
HORVU0Hr1G014460.1 Barley nucleus 25.81 26.34
PGSC0003DMT400012725 Potato cytosol 18.34 25.9
Zm00001d012821_P003 Maize extracellular, vacuole 27.5 24.7
PGSC0003DMT400063250 Potato nucleus 15.11 23.67
PGSC0003DMT400035056 Potato cytosol 12.9 22.89
PGSC0003DMT400012724 Potato cytosol, nucleus, plastid 18.17 20.98
PGSC0003DMT400093081 Potato nucleus 6.28 19.58
Protein Annotations
EntrezGene:102584854Gene3D:3.90.228.10MapMan:35.1GO:GO:0003674GO:GO:0003824GO:GO:0003950
GO:GO:0016740InterPro:IPR004170InterPro:IPR012317UniProt:M1B6R2PFAM:PF12174EnsemblPlantsGene:PGSC0003DMG400014804
PGSC:PGSC0003DMG400014804EnsemblPlants:PGSC0003DMT400038368PFscan:PS50918PFscan:PS51059PANTHER:PTHR32263PANTHER:PTHR32263:SF4
InterPro:Poly(ADP-ribose)pol_cat_domInterPro:RSTSUPFAM:SSF117839SUPFAM:SSF56399UniParc:UPI00029552D2InterPro:WWE-dom
InterPro:WWE_dom_sfRefSeq:XP_006352905.1::::
Description
Ceo protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014804]
Coordinates
chr8:-:49065466..49074527
Molecular Weight (calculated)
66546.3 Da
IEP (calculated)
7.037
GRAVY (calculated)
-0.431
Length
589 amino acids
Sequence
(BLAST)
001: MESNWVEVLD NDRRTADVDS KSKVASQYVA RIVGAGTEKL EELSFQPNCS SFYSKLGKRK RTVEGESNCR SHLRKSTLKN YSNFIKSGLP QRVLYHQNGE
101: WNDFPQDIVR IVKEDFRAKK AVIEVNFGGF HVILDILYMV QVNLVTGLEK PIAWIDEAGG CFFPDLCLLS CKMHDNFEIQ SQRTEEFSAA EPDRATNIKL
201: HLEIDFNGPN NCKVDEGVEE SNVRVKRIKV DPLKDNQQFA VDQKSYVAEN QQDQESLSPI LEDTLKLVDA ESVKTMFVKG MNTICMVDIV KISQCLSKYM
301: RNRLELFEKQ VEITQKYRGN SNVRYAWLAA SKEVVSTIMN YGLMHGARGQ KTNLGVGVHL IAQDCASKSA ASCDIDENGI RYMVLCRVIL GNEELLHFGS
401: EQSYPSNEKY DSGVDDLESP TYYTVWNMNM NTHIYPEYVV SFRMSSGAEG APIKEESRLD VSRVTSQGSE EQLDLNKLPT ELGNCQFVRN IQQSRGVGVG
501: TNKSPKSPWM PFSMLFGAIS AKVSPKDLKL VHAHYDLFRS KKISRNDFIR RLRLIVGDQL LKSTITNLQC KPPSASPCFM NVPSGESNC
Best Arabidopsis Sequence Match ( AT1G32230.1 )
(BLAST)
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.