Factsheet for PGSC0003DMT400074143

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038368
PGSC0003DMT400043197

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	PGSC0003DMT400038368	AT1G32230.1	19548978
AT5G48250.1	PGSC0003DMT400043197	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006240.1.1	Tomato	nucleus	62.99	95.54
PGSC0003DMT400044878	Potato	nucleus	69.12	68.61
PGSC0003DMT400013624	Potato	nucleus	69.12	68.28
KRH17709	Soybean	nucleus	61.52	61.37
KRG89998	Soybean	nucleus	60.54	60.39
KRH72628	Soybean	nucleus	59.8	60.25
AT3G07650.1	Thale cress	nucleus	54.17	59.41
CDY35952	Canola	nucleus	53.68	59.35
KRH16989	Soybean	nucleus	59.56	59.12
CDY28029	Canola	nucleus	53.43	58.6
CDY22125	Canola	nucleus	52.45	58.47
Bra040020.1-P	Field mustard	nucleus	52.21	58.2
Bra001264.1-P	Field mustard	nucleus	50.0	58.12
VIT_12s0057g01350.t01	Wine grape	nucleus	58.82	57.83
CDY07979	Canola	nucleus	49.51	57.39
CDY48743	Canola	nucleus	48.77	56.86
CDX85321	Canola	nucleus	50.0	56.82
Bra029666.1-P	Field mustard	nucleus	53.68	56.74
CDY05691	Canola	nucleus	48.04	56.48
VIT_00s0194g00070.t01	Wine grape	nucleus	57.11	56.28
CDX86318	Canola	nucleus	49.26	56.15
Bra020709.1-P	Field mustard	nucleus	48.28	56.13
AT5G48250.1	Thale cress	nucleus	50.74	55.5
Bra037499.1-P	Field mustard	nucleus	46.81	55.36
CDX74034	Canola	nucleus	50.0	52.31
EES07342	Sorghum	nucleus	51.23	51.48
TraesCS7A01G218600.1	Wheat	nucleus	49.75	51.26
TraesCS7D01G220300.1	Wheat	nucleus	49.75	51.26
TraesCS6A01G286400.3	Wheat	nucleus	48.77	51.03
Os06t0298200-01	Rice	nucleus	50.98	50.98
TraesCS6B01G315400.1	Wheat	nucleus	48.28	50.51
TraesCS6D01G267100.1	Wheat	nucleus	48.28	50.26
Zm00001d051684_P007	Maize	nucleus	50.0	50.25
Os02t0724000-01	Rice	nucleus	50.0	50.12
KXG19836	Sorghum	nucleus	50.49	50.12
HORVU6Hr1G071950.2	Barley	nucleus	46.81	50.0
GSMUA_Achr3P04260_001	Banana	nucleus	50.74	49.29
GSMUA_Achr9P12860_001	Banana	nucleus	49.51	48.44
GSMUA_Achr10P...	Banana	nucleus	47.55	48.38
GSMUA_Achr7P20150_001	Banana	nucleus	48.77	48.3
GSMUA_Achr5P22460_001	Banana	nucleus	45.83	47.83
Zm00001d045804_P003	Maize	nucleus	50.49	47.25
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	38.97	47.18
GSMUA_Achr5P04270_001	Banana	nucleus	47.55	45.97
Zm00001d017885_P001	Maize	nucleus	44.61	39.48
PGSC0003DMT400003198	Potato	nucleus	36.27	35.07
PGSC0003DMT400075520	Potato	nucleus	21.08	24.09
PGSC0003DMT400067657	Potato	nucleus	20.34	23.92
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.47	22.09
PGSC0003DMT400065377	Potato	nucleus	23.77	21.41
PGSC0003DMT400029591	Potato	nucleus	19.85	21.37
PGSC0003DMT400026068	Potato	nucleus	20.83	20.99
PGSC0003DMT400026065	Potato	nucleus	21.08	20.82
PGSC0003DMT400070680	Potato	nucleus	18.63	19.74
PGSC0003DMT400068637	Potato	nucleus	11.76	18.11
PGSC0003DMT400016342	Potato	nucleus	11.52	17.8
PGSC0003DMT400092769	Potato	nucleus	10.54	16.6

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402
EMBL:KX576518	UniProt:M1CT82	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400028818	PGSC:PGSC0003DMG400028818	EnsemblPlants:PGSC0003DMT400074143
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336	UniParc:UPI0002952CD6
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028818]

Coordinates

chr12:+:6077490..6085194

Molecular Weight (calculated)

45122.5 Da

IEP (calculated)

5.080

GRAVY (calculated)

-0.600

Length

408 amino acids

Sequence
(BLAST)

001: MGYICEYCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLICER CNSQPAVVRC VEERTSLCQN CDWSGHASSS SGSSMHKRQA LSCYTGCPSA
101: AELSNIWSFL LDDPSIGDTC EQRMGSMSIN DNRPRDGQDT QGKDNSQNVC AAVEVNDMNI SEKSNLLVES SMPTFDNKLH NVEPPIGSSS KGCYMGAKGS
201: SLIEEDPYCD NLIMDAVDLS IENYEELFGD SLNYPDELFE NENLDSFFGM KDIKGADYSY RGVNAAEGSS NWRVNTVQPT CSDAASADSM MSCKTDSILY
301: FARQSSLSVS NQTGGECSAG DHQDCGVSPM LLMGEPPWCP PCTEISSTST SRSNAVLRYK EKKKTRKFDK RVRYVSRKAR ADVRRRVKGR FIKAGDAYDY
401: DPLPTRSY

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.