Factsheet for PGSC0003DMT400013624

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038368
PGSC0003DMT400043197

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48250.1	PGSC0003DMT400038368	AT1G32230.1	19548978
AT5G48250.1	PGSC0003DMT400043197	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g020020.2.1	Tomato	nucleus	92.74	93.41
PGSC0003DMT400074143	Potato	nucleus	68.28	69.12
PGSC0003DMT400044878	Potato	nucleus	68.04	68.37
KRH17709	Soybean	nucleus	61.99	62.59
KRG89998	Soybean	nucleus	61.5	62.1
KRH72628	Soybean	nucleus	59.56	60.74
VIT_12s0057g01350.t01	Wine grape	nucleus	60.77	60.48
KRH16989	Soybean	nucleus	59.56	59.85
VIT_00s0194g00070.t01	Wine grape	nucleus	57.63	57.49
AT3G07650.1	Thale cress	nucleus	51.33	56.99
Bra001264.1-P	Field mustard	nucleus	47.94	56.41
CDY35952	Canola	nucleus	50.12	56.1
CDY22125	Canola	nucleus	49.64	56.01
Bra040020.1-P	Field mustard	nucleus	49.15	55.46
CDY07979	Canola	nucleus	47.22	55.4
CDY28029	Canola	nucleus	49.39	54.84
CDY48743	Canola	nucleus	46.25	54.57
CDX85321	Canola	nucleus	47.22	54.32
Bra020709.1-P	Field mustard	nucleus	45.76	53.85
Bra029666.1-P	Field mustard	nucleus	49.88	53.37
AT5G48250.1	Thale cress	nucleus	48.18	53.35
CDX86318	Canola	nucleus	46.0	53.07
CDY05691	Canola	nucleus	44.55	53.03
Os06t0298200-01	Rice	nucleus	51.57	52.21
Bra037499.1-P	Field mustard	nucleus	43.58	52.17
GSMUA_Achr3P04260_001	Banana	nucleus	52.3	51.43
KXG19836	Sorghum	nucleus	50.85	51.09
CDX74034	Canola	nucleus	47.7	50.51
HORVU6Hr1G071950.2	Barley	nucleus	46.49	50.26
TraesCS6B01G315400.1	Wheat	nucleus	47.46	50.26
GSMUA_Achr5P22460_001	Banana	nucleus	47.46	50.13
Os02t0724000-01	Rice	nucleus	49.39	50.12
GSMUA_Achr9P12860_001	Banana	nucleus	50.36	49.88
TraesCS7D01G220300.1	Wheat	nucleus	47.7	49.75
TraesCS7A01G218600.1	Wheat	nucleus	47.7	49.75
GSMUA_Achr7P20150_001	Banana	nucleus	49.39	49.51
TraesCS6A01G286400.3	Wheat	nucleus	46.73	49.49
GSMUA_Achr10P...	Banana	nucleus	47.94	49.38
TraesCS6D01G267100.1	Wheat	nucleus	46.73	49.23
GSMUA_Achr5P04270_001	Banana	nucleus	50.12	49.05
EES07342	Sorghum	nucleus	47.7	48.52
Zm00001d045804_P003	Maize	nucleus	50.36	47.71
Zm00001d051684_P007	Maize	nucleus	46.25	47.04
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	37.05	45.4
Zm00001d017885_P001	Maize	nucleus	41.4	37.09
PGSC0003DMT400003198	Potato	nucleus	36.56	35.78
PGSC0003DMT400075520	Potato	nucleus	20.58	23.81
PGSC0003DMT400067657	Potato	nucleus	19.61	23.34
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.6	23.31
PGSC0003DMT400065377	Potato	nucleus	24.7	22.52
PGSC0003DMT400029591	Potato	nucleus	20.1	21.9
PGSC0003DMT400026065	Potato	nucleus	21.07	21.07
PGSC0003DMT400026068	Potato	nucleus	20.34	20.74
PGSC0003DMT400070680	Potato	nucleus	18.4	19.74
PGSC0003DMT400016342	Potato	nucleus	11.38	17.8
PGSC0003DMT400068637	Potato	nucleus	11.38	17.74
PGSC0003DMT400092769	Potato	nucleus	10.41	16.6

Protein Annotations

EntrezGene:102603868	MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315
InterPro:IPR010402	EMBL:KX576523	UniProt:M1A334	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400005325	PGSC:PGSC0003DMG400005325
EnsemblPlants:PGSC0003DMT400013624	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF39	SMART:SM00336
UniParc:UPI0002951FF7	RefSeq:XP_006353101.1	RefSeq:XP_006353102.1	RefSeq:XP_006353103.1	RefSeq:XP_015166684.1	RefSeq:XP_015166685.1
RefSeq:XP_015166686.1	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400005325]

Coordinates

chr5:+:35571410..35577321

Molecular Weight (calculated)

45049.4 Da

IEP (calculated)

5.687

GRAVY (calculated)

-0.512

Length

413 amino acids

Sequence
(BLAST)

001: MGHICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAIVRR VEEKVSLCKN CDSIGHAGSG TGSMHNRQAL SSYTGCPSAA
101: ELSTIWSFLL DNPLGGDSTC EKGMGSMSIT DNRPTDSRAP QGTFSSQDAS ATVEVSEMHT PNKSSVLVGS SMLTLGNKLN KAEQIVGSVN FSSSKGCYSG
201: VKGSTIYEED PFSQDFNMDE VDLSFENYEE LFSGSLDNPN QLFENDDIDG LFGTKDMSVS DSCCQDANAV EGSSIRRVRT MLPACSNAES ADSLMSCKTE
301: PTVYFARQAS ILSFSNLGGE SNAGDYQECG ASTMLLMGEP PWCHPCPESS LASSSRSDAV LRYKEKKKTR KFDKHVRYAS RKARADVRRR VKGRFVKAGD
401: AYDYDPLNET RSF

Best Arabidopsis Sequence Match ( AT3G07650.3 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC VEERVSLCQN CDWSGHNNSN NNNSSSSSTS PQQHKRQTIS
101: CYSGCPSSSE LASIWSFCLD LAGQSICEQE LGMMNIDDDG PTDKKTCNED KKDVLVGSSS IPETSSVPQG KSSSAKDVGM CEDDFYGNLG MDEVDMALEN
201: YEELFGTAFN PSEELFGHGG IDSLFHKHQT APEGGNSVQP AGSNDSFMSS KTEPIICFAS KPAHSNISFS GVTGESSAGD FQECGASSSI QLSGEPPWYP
301: PTLQDNNACS HSVTRNNAVM RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY

Arabidopsis Description

COL9AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.