Factsheet for PGSC0003DMT400067657

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006530.2.1	Tomato	nucleus	93.08	92.55
PGSC0003DMT400075520	Potato	nucleus	71.47	69.47
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	56.48	56.48
PGSC0003DMT400068637	Potato	nucleus	42.07	55.09
CDY19821	Canola	nucleus	46.4	54.76
PGSC0003DMT400016342	Potato	nucleus	41.5	54.55
CDX88145	Canola	nucleus	45.82	54.08
PGSC0003DMT400092769	Potato	nucleus	38.9	52.12
CDX87105	Canola	nucleus, plastid	46.11	50.47
CDX80476	Canola	nucleus, plastid	46.97	49.54
AT5G24930.1	Thale cress	nucleus	51.3	49.17
Bra009805.1-P	Field mustard	nucleus	49.57	49.0
Bra036528.1-P	Field mustard	nucleus	48.7	48.99
PGSC0003DMT400026065	Potato	nucleus	46.69	39.23
PGSC0003DMT400026068	Potato	nucleus	45.24	38.77
PGSC0003DMT400070680	Potato	nucleus	42.65	38.44
PGSC0003DMT400074143	Potato	nucleus	23.92	20.34
PGSC0003DMT400044878	Potato	nucleus	23.34	19.71
PGSC0003DMT400013624	Potato	nucleus	23.34	19.61
PGSC0003DMT400029591	Potato	nucleus	21.04	19.26
PGSC0003DMT400003198	Potato	nucleus	22.77	18.72
PGSC0003DMT400065377	Potato	nucleus	22.19	17.0
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	19.31	13.7

Protein Annotations

EntrezGene:102585080	MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315
InterPro:IPR010402	EMBL:KX576515	UniProt:M1CHN2	PFAM:PF00643	PFAM:PF06203	EnsemblPlantsGene:PGSC0003DMG400026311
PGSC:PGSC0003DMG400026311	EnsemblPlants:PGSC0003DMT400067657	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF14
SMART:SM00336	UniParc:UPI00029544EF	RefSeq:XP_006357063.1	InterPro:Znf_B-box	SEG:seg	:

Description

CONSTANS [Source:PGSC_GENE;Acc:PGSC0003DMG400026311]

Coordinates

chr8:-:2052883..2054826

Molecular Weight (calculated)

38652.9 Da

IEP (calculated)

5.166

GRAVY (calculated)

-0.595

Length

347 amino acids

Sequence
(BLAST)

001: MVAESWSTTA KRCDACKATP STVFCKADMA FLCLTCDSKI HAANKLASRH ARVWVCEVCE HAPASVTCKA DAAALCVTCD QDIHAANPLA RRHERIPVVP
101: FYDSASARSP RGAGADENDP HQHEDETEEE EAEAESWLLQ TPNSNTQGIE YKSAEYLFSD VDPYVEMDII ADQKTCTTTM DIAHNQEEYK EDCVVPHVQN
201: NKNEIQLQGP VVDGYPTYEM DFSGGSKPFM YNFTTQSISQ SVSSSSMEVG VVPDHNTMTD VSNTFVRNSA IDGLPNPVSS LDREARVLRY REKRKNRKFE
301: KTIRYASRKA YAETRPRIKG RFAKRTENDM GDSLVASDAS YGVVPSF

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.