Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88145 | Canola | nucleus | 75.41 | 92.86 |
| CDY19821 | Canola | nucleus | 74.86 | 92.18 |
| Bra009805.1-P | Field mustard | nucleus | 88.95 | 91.74 |
| CDX80476 | Canola | nucleus, plastid | 82.6 | 90.88 |
| CDX87105 | Canola | nucleus, plastid | 79.56 | 90.85 |
| Bra036528.1-P | Field mustard | nucleus | 85.91 | 90.14 |
| VIT_04s0008g07340.t01 | Wine grape | nucleus, plastid | 62.71 | 65.42 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 50.55 | 62.24 |
| Solyc12g096500.1.1 | Tomato | nucleus | 51.38 | 51.96 |
| PGSC0003DMT400067657 | Potato | nucleus | 49.17 | 51.3 |
| PGSC0003DMT400075520 | Potato | nucleus | 50.28 | 50.98 |
| Solyc08g006530.2.1 | Tomato | nucleus | 48.9 | 50.72 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 44.2 | 45.07 |
| AT3G02380.1 | Thale cress | nucleus | 41.16 | 42.94 |
| AT5G15850.1 | Thale cress | nucleus | 39.78 | 40.56 |
| AT5G15840.1 | Thale cress | nucleus | 39.23 | 38.07 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 37.57 | 36.86 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 37.29 | 36.59 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 37.29 | 36.49 |
| Os06t0275000-01 | Rice | mitochondrion | 36.74 | 33.67 |
| EER88227 | Sorghum | nucleus | 38.12 | 33.58 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 38.95 | 32.94 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 34.25 | 32.38 |
| OQU85473 | Sorghum | nucleus | 32.6 | 32.24 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 33.98 | 32.11 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 33.7 | 31.69 |
| AT2G47890.1 | Thale cress | nucleus | 19.89 | 21.69 |
| AT3G07650.1 | Thale cress | nucleus | 21.82 | 21.24 |
| AT2G33500.1 | Thale cress | nucleus | 22.1 | 19.9 |
| AT3G21880.2 | Thale cress | nucleus | 20.17 | 19.84 |
| AT4G15250.1 | Thale cress | nucleus | 17.96 | 19.7 |
| AT5G48250.1 | Thale cress | nucleus | 19.89 | 19.3 |
| AT1G28050.1 | Thale cress | nucleus | 22.38 | 18.71 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 15.47 | 14.55 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:832563 | EMBL:AB493757 | ProteinID:AED93379.2 | EMBL:AF069716 | ArrayExpress:AT5G24930 |
| EnsemblPlantsGene:AT5G24930 | RefSeq:AT5G24930 | TAIR:AT5G24930 | RefSeq:AT5G24930-TAIR-G | EnsemblPlants:AT5G24930.1 | TAIR:AT5G24930.1 |
| Symbol:ATCOL4 | EMBL:AY052697 | EMBL:AY143826 | UniProt:C0SVQ4 | InterPro:CCT_domain | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008270 | GO:GO:0009416 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | GO:GO:0046872 | InterPro:IPR000315 | InterPro:IPR010402 |
| RefSeq:NP_197875.3 | PFAM:PF00643 | PFAM:PF06203 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF14 |
| UniProt:Q940T9 | SMART:SM00336 | UniParc:UPI0000162579 | InterPro:Znf_B-box | SEG:seg | : |
Description
COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
Coordinates
chr5:+:8589457..8590949
Molecular Weight (calculated)
39168.5 Da
IEP (calculated)
5.287
GRAVY (calculated)
-0.454
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.