Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26470 | Canola | nucleus | 69.3 | 73.87 |
| Bra008668.1-P | Field mustard | nucleus | 69.86 | 73.59 |
| CDX69493 | Canola | nucleus | 69.58 | 73.29 |
| Bra023541.1-P | Field mustard | nucleus | 64.23 | 72.38 |
| CDX85529 | Canola | nucleus | 64.51 | 72.24 |
| CDX90969 | Canola | nucleus | 61.97 | 68.54 |
| AT3G02380.1 | Thale cress | nucleus | 65.63 | 67.15 |
| AT5G15840.1 | Thale cress | nucleus | 58.59 | 55.76 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 61.13 | 55.5 |
| KRH18308 | Soybean | nucleus | 54.65 | 53.74 |
| KRG93763 | Soybean | nucleus | 54.65 | 53.01 |
| Solyc02g089500.2.1 | Tomato | nucleus | 20.85 | 52.11 |
| KRH45169 | Soybean | nucleus | 50.42 | 51.44 |
| KRH01455 | Soybean | nucleus | 50.7 | 51.14 |
| PGSC0003DMT400026065 | Potato | nucleus | 56.62 | 48.67 |
| PGSC0003DMT400026068 | Potato | nucleus | 53.24 | 46.67 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 38.31 | 46.26 |
| GSMUA_Achr4P18680_001 | Banana | nucleus | 11.27 | 45.45 |
| GSMUA_Achr3P28130_001 | Banana | nucleus | 32.96 | 41.79 |
| GSMUA_Achr9P22690_001 | Banana | nucleus, plastid | 32.96 | 40.21 |
| AT5G24930.1 | Thale cress | nucleus | 40.56 | 39.78 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 35.49 | 35.49 |
| AT2G47890.1 | Thale cress | nucleus | 21.13 | 22.59 |
| AT3G07650.1 | Thale cress | nucleus | 23.1 | 22.04 |
| AT4G15250.1 | Thale cress | nucleus | 19.72 | 21.21 |
| AT5G48250.1 | Thale cress | nucleus | 21.97 | 20.91 |
| AT3G21880.2 | Thale cress | nucleus | 21.41 | 20.65 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 15.21 | 19.01 |
| AT2G33500.1 | Thale cress | nucleus | 20.28 | 17.91 |
| AT1G28050.1 | Thale cress | nucleus | 21.13 | 17.32 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 15.49 | 14.29 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:831442 | ProteinID:AED92215.1 | ArrayExpress:AT5G15850 | EnsemblPlantsGene:AT5G15850 | RefSeq:AT5G15850 |
| TAIR:AT5G15850 | RefSeq:AT5G15850-TAIR-G | EnsemblPlants:AT5G15850.1 | TAIR:AT5G15850.1 | EMBL:AY074369 | Unigene:At.24486 |
| EMBL:BT002363 | ProteinID:CAA71588.1 | ProteinID:CAC01784.1 | InterPro:CCT_domain | Symbol:COL1 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 |
| GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 |
| GO:GO:0042802 | GO:GO:0046872 | InterPro:IPR000315 | InterPro:IPR010402 | RefSeq:NP_197089.1 | UniProt:O50055 |
| PFAM:PF00643 | PFAM:PF06203 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 | SMART:SM00336 |
| UniParc:UPI00000017A3 | EMBL:Y10555 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
COL1Zinc finger protein CONSTANS-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:O50055]
Coordinates
chr5:-:5176091..5177897
Molecular Weight (calculated)
39492.9 Da
IEP (calculated)
6.500
GRAVY (calculated)
-0.656
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKVESNWAQ ACDTCRSAAC TVYCRADSAY LCSSCDAQVH AANRLASRHE RVRVCQSCER APAAFFCKAD AASLCTTCDS EIHSANPLAR RHQRVPILPI
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF
101: SEYSYSSTAT NHSCETTVTD PENRLVLGQE EEDEDEAEAA SWLLPNSGKN SGNNNGFSIG DEFLNLVDYS SSDKQFTDQS NQYQLDCNVP QRSYGEDGVV
201: PLQIEVSKGM YQEQQNFQLS INCGSWGALR SSNGSLSHMV NVSSMDLGVV PESTTSDATV SNPRSPKAVT DQPPYPPAQM LSPRDREARV LRYREKKKMR
301: KFEKTIRYAS RKAYAEKRPR IKGRFAKKKD VDEEANQAFS TMITFDTGYG IVPSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.