Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008669.1-P | Field mustard | nucleus | 72.92 | 74.32 |
| CDX69494 | Canola | nucleus | 72.92 | 73.91 |
| CDY26469 | Canola | nucleus | 72.12 | 73.5 |
| AT3G02380.1 | Thale cress | nucleus | 56.84 | 61.1 |
| AT5G15850.1 | Thale cress | nucleus | 55.76 | 58.59 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 53.89 | 51.41 |
| KRG93763 | Soybean | nucleus | 50.13 | 51.09 |
| KRH18308 | Soybean | nucleus | 49.06 | 50.69 |
| KRH45169 | Soybean | nucleus | 46.65 | 50.0 |
| Solyc02g089500.2.1 | Tomato | nucleus | 19.03 | 50.0 |
| KRH01455 | Soybean | nucleus | 46.11 | 48.86 |
| PGSC0003DMT400026065 | Potato | nucleus | 52.28 | 47.22 |
| PGSC0003DMT400026068 | Potato | nucleus | 50.67 | 46.67 |
| GSMUA_Achr4P18680_001 | Banana | nucleus | 10.99 | 46.59 |
| GSMUA_Achr3P28130_001 | Banana | nucleus | 32.44 | 43.21 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 33.24 | 42.18 |
| AT5G24930.1 | Thale cress | nucleus | 38.07 | 39.23 |
| GSMUA_Achr9P22690_001 | Banana | nucleus, plastid | 29.76 | 38.14 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 35.39 | 37.18 |
| AT2G47890.1 | Thale cress | nucleus | 19.84 | 22.29 |
| AT4G15250.1 | Thale cress | nucleus | 19.3 | 21.82 |
| AT3G07650.1 | Thale cress | nucleus | 21.72 | 21.77 |
| AT5G48250.1 | Thale cress | nucleus | 21.45 | 21.45 |
| AT3G21880.2 | Thale cress | nucleus | 19.57 | 19.84 |
| HORVU0Hr1G022380.1 | Barley | cytosol | 14.48 | 19.01 |
| AT1G28050.1 | Thale cress | nucleus | 21.98 | 18.94 |
| AT2G33500.1 | Thale cress | nucleus | 19.3 | 17.91 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 14.75 | 14.29 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:831441 | UniProt:A0A178UTB8 | ProteinID:AED92213.1 | ProteinID:AED92214.1 | ArrayExpress:AT5G15840 |
| EnsemblPlantsGene:AT5G15840 | RefSeq:AT5G15840 | TAIR:AT5G15840 | RefSeq:AT5G15840-TAIR-G | EnsemblPlants:AT5G15840.1 | TAIR:AT5G15840.1 |
| EMBL:AY086574 | EMBL:BT001926 | ProteinID:CAC01783.1 | InterPro:CCT_domain | Symbol:CO | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 |
| GO:GO:0009987 | GO:GO:0010018 | GO:GO:0010218 | GO:GO:0030154 | GO:GO:0046872 | InterPro:IPR000315 |
| InterPro:IPR010402 | RefSeq:NP_001031887.1 | RefSeq:NP_197088.1 | ProteinID:OAO96092.1 | PFAM:PF00643 | PFAM:PF06203 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50119 |
| PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 | UniProt:Q39057 | SMART:SM00336 | UniParc:UPI0000001417 |
| EMBL:X94937 | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
COZinc finger protein CONSTANS [Source:UniProtKB/Swiss-Prot;Acc:Q39057]
Coordinates
chr5:-:5170162..5173085
Molecular Weight (calculated)
41988.7 Da
IEP (calculated)
6.956
GRAVY (calculated)
-0.845
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKQESNDIG SGENNRARPC DTCRSNACTV YCHADSAYLC MSCDAQVHSA NRVASRHKRV RVCESCERAP AAFLCEADDA SLCTACDSEV HSANPLARRH
101: QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN
201: CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS INHNAYISSM ETGVVPESTA CVTTASHPRT PKGTVEQQPD PASQMITVTQ
301: LSPMDREARV LRYREKRKTR KFEKTIRYAS RKAYAEIRPR VNGRFAKREI EAEEQGFNTM LMYNTGYGIV PSF
101: QRVPILPISG NSFSSMTTTH HQSEKTMTDP EKRLVVDQEE GEEGDKDAKE VASWLFPNSD KNNNNQNNGL LFSDEYLNLV DYNSSMDYKF TGEYSQHQQN
201: CSVPQTSYGG DRVVPLKLEE SRGHQCHNQQ NFQFNIKYGS SGTHYNDNGS INHNAYISSM ETGVVPESTA CVTTASHPRT PKGTVEQQPD PASQMITVTQ
301: LSPMDREARV LRYREKRKTR KFEKTIRYAS RKAYAEIRPR VNGRFAKREI EAEEQGFNTM LMYNTGYGIV PSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.