Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX80141 | Canola | nucleus | 69.88 | 69.88 |
| CDY53026 | Canola | nucleus | 69.88 | 69.46 |
| Bra004423.1-P | Field mustard | nucleus | 69.58 | 69.16 |
| KRH68113 | Soybean | nucleus | 46.99 | 44.7 |
| KRG96381 | Soybean | nucleus | 46.99 | 44.44 |
| Solyc09g074560.2.1 | Tomato | nucleus | 47.89 | 42.63 |
| PGSC0003DMT400029591 | Potato | nucleus | 48.19 | 42.22 |
| VIT_07s0104g01360.t01 | Wine grape | nucleus | 48.8 | 41.12 |
| KRH71535 | Soybean | nucleus | 40.06 | 39.12 |
| KRH31920 | Soybean | nucleus | 40.66 | 38.79 |
| GSMUA_Achr6P13590_001 | Banana | cytosol, mitochondrion, nucleus | 9.64 | 35.96 |
| Os07t0667300-01 | Rice | nucleus | 32.23 | 28.16 |
| GSMUA_Achr3P08880_001 | Banana | nucleus | 34.34 | 27.94 |
| TraesCS2A01G119600.1 | Wheat | nucleus | 31.33 | 27.23 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 30.72 | 26.77 |
| AT2G33500.1 | Thale cress | nucleus | 32.23 | 26.62 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 31.02 | 26.61 |
| Os03t0351100-01 | Rice | nucleus | 32.23 | 26.55 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 31.63 | 26.45 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 31.63 | 26.45 |
| TraesCS4A01G140600.1 | Wheat | nucleus | 32.53 | 26.21 |
| EER99873 | Sorghum | nucleus | 32.53 | 26.15 |
| Zm00001d007107_P001 | Maize | nucleus | 31.93 | 25.92 |
| Zm00001d029149_P001 | Maize | nucleus | 30.72 | 25.69 |
| EER94860 | Sorghum | nucleus | 31.63 | 25.42 |
| AT1G28050.1 | Thale cress | nucleus | 31.93 | 24.48 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 20.78 | 23.47 |
| HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 32.53 | 23.18 |
| AT4G15250.1 | Thale cress | nucleus | 21.69 | 21.82 |
| Zm00001d022500_P001 | Maize | nucleus | 11.75 | 21.55 |
| AT5G48250.1 | Thale cress | nucleus | 23.8 | 21.18 |
| AT5G15850.1 | Thale cress | nucleus | 22.59 | 21.13 |
| AT3G02380.1 | Thale cress | nucleus | 21.99 | 21.04 |
| AT3G07650.1 | Thale cress | nucleus | 23.49 | 20.97 |
| AT5G24930.1 | Thale cress | nucleus | 21.69 | 19.89 |
| AT5G15840.1 | Thale cress | nucleus | 22.29 | 19.84 |
| AT3G21880.2 | Thale cress | nucleus | 21.39 | 19.29 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 20.48 | 19.15 |
| HORVU2Hr1G020760.2 | Barley | cytosol, mitochondrion | 18.67 | 15.62 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 17.77 | 15.32 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:819401 | UniProt:A0A178VVW9 | ProteinID:AAC63643.1 | ProteinID:AAM15120.1 | EMBL:AB493598 |
| ProteinID:AEC10906.1 | ArrayExpress:AT2G47890 | EnsemblPlantsGene:AT2G47890 | RefSeq:AT2G47890 | TAIR:AT2G47890 | RefSeq:AT2G47890-TAIR-G |
| EnsemblPlants:AT2G47890.1 | TAIR:AT2G47890.1 | Unigene:At.12948 | EMBL:BT023413 | UniProt:C0SV95 | InterPro:CCT_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| GO:GO:0044212 | GO:GO:0046872 | InterPro:IPR000315 | InterPro:IPR010402 | RefSeq:NP_182310.1 | UniProt:O82256 |
| ProteinID:OAP09193.1 | PFAM:PF00643 | PFAM:PF06203 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009029 | PO:PO:0009046 | PO:PO:0009047 | PFscan:PS50119 |
| PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF16 | SMART:SM00336 | UniParc:UPI000000115F | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
Coordinates
chr2:+:19607996..19610287
Molecular Weight (calculated)
37512.1 Da
IEP (calculated)
5.975
GRAVY (calculated)
-0.568
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.