Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G21880.2 | Thale cress | nucleus | 57.88 | 51.9 |
| KRH26833 | Soybean | nucleus | 49.39 | 38.53 |
| VIT_12s0059g02500.t01 | Wine grape | nucleus | 49.7 | 37.79 |
| KRH22524 | Soybean | nucleus | 47.88 | 37.35 |
| Solyc05g046040.1.1 | Tomato | nucleus | 46.06 | 36.28 |
| PGSC0003DMT400003198 | Potato | nucleus | 45.76 | 35.78 |
| AT3G07650.1 | Thale cress | nucleus | 35.76 | 31.72 |
| AT5G48250.1 | Thale cress | nucleus | 35.76 | 31.64 |
| VIT_19s0014g05120.t01 | Wine grape | nucleus | 28.79 | 25.33 |
| AT2G47890.1 | Thale cress | nucleus | 21.82 | 21.69 |
| AT3G02380.1 | Thale cress | nucleus | 21.82 | 20.75 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 17.88 | 20.07 |
| AT5G15850.1 | Thale cress | nucleus | 21.21 | 19.72 |
| AT2G33500.1 | Thale cress | nucleus | 23.94 | 19.65 |
| AT5G15840.1 | Thale cress | nucleus | 21.82 | 19.3 |
| AT1G28050.1 | Thale cress | nucleus | 23.94 | 18.24 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 19.39 | 18.03 |
| AT5G24930.1 | Thale cress | nucleus | 19.7 | 17.96 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 20.91 | 17.92 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:827191 | ProteinID:AEE83577.1 | ArrayExpress:AT4G15250 | EnsemblPlantsGene:AT4G15250 | RefSeq:AT4G15250 |
| TAIR:AT4G15250 | RefSeq:AT4G15250-TAIR-G | EnsemblPlants:AT4G15250.1 | TAIR:AT4G15250.1 | ProteinID:CAB10304.1 | ProteinID:CAB78567.1 |
| InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR000315 |
| InterPro:IPR010402 | RefSeq:NP_001319946.1 | UniProt:O23379 | PFAM:PF00643 | PFAM:PF06203 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PFscan:PS50119 | PFscan:PS51017 |
| PANTHER:PTHR31717 | PANTHER:PTHR31717:SF27 | SMART:SM00336 | UniParc:UPI0000127E53 | InterPro:Znf_B-box | SEG:seg |
Description
COL11Putative zinc finger protein CONSTANS-LIKE 11 [Source:UniProtKB/Swiss-Prot;Acc:O23379]
Coordinates
chr4:-:8709767..8711526
Molecular Weight (calculated)
36621.0 Da
IEP (calculated)
4.977
GRAVY (calculated)
-0.499
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARCDFCGT EKALIYCKSD SAKLCLNCDV NVHSANPLSQ RHTRSLLCEK CSLQPTAVHC MNENVSLCQG CQWTASNCTG LGHRLQSLNP YSDCPSPSDF
101: GKIWSSTLEP SVTSLVSPFS DTLLQELDDW NGSSTSVVTQ TQNLKDYSSF FPMESNLPKV IEEECSGLDL CEGINLDDAP LNFNASNDII GCSSLDNTKC
201: YEYEDSFKEE NNIGLPSLLL PTLSGNVVPN MSLSMSNLTG ESNATDYQDC GISPGFLIGD SPWESNVEVS FNPKLRDEAK KRYKQKKSKR MFGKQIRYAS
301: RKARADTRKR VKGRFVKSGE TFEYDPSLVM
101: GKIWSSTLEP SVTSLVSPFS DTLLQELDDW NGSSTSVVTQ TQNLKDYSSF FPMESNLPKV IEEECSGLDL CEGINLDDAP LNFNASNDII GCSSLDNTKC
201: YEYEDSFKEE NNIGLPSLLL PTLSGNVVPN MSLSMSNLTG ESNATDYQDC GISPGFLIGD SPWESNVEVS FNPKLRDEAK KRYKQKKSKR MFGKQIRYAS
301: RKARADTRKR VKGRFVKSGE TFEYDPSLVM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.