Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25892 | Canola | nucleus | 82.54 | 87.99 |
| CDY02749 | Canola | nucleus, plastid | 63.66 | 87.26 |
| CDY58843 | Canola | nucleus, plastid | 82.82 | 85.96 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 82.54 | 85.67 |
| CDY49730 | Canola | nucleus | 51.83 | 84.4 |
| Bra002709.1-P | Field mustard | nucleus | 51.83 | 84.4 |
| KRH18980 | Soybean | nucleus | 57.46 | 55.89 |
| KRH02915 | Soybean | nucleus | 56.62 | 53.74 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 40.56 | 48.98 |
| AT5G24930.1 | Thale cress | nucleus | 45.07 | 44.2 |
| AT3G02380.1 | Thale cress | nucleus | 38.03 | 38.9 |
| AT5G15850.1 | Thale cress | nucleus | 35.49 | 35.49 |
| AT5G15840.1 | Thale cress | nucleus | 37.18 | 35.39 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 35.49 | 34.15 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 35.21 | 33.88 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 34.65 | 33.24 |
| EER88227 | Sorghum | nucleus | 36.9 | 31.87 |
| Os06t0275000-01 | Rice | mitochondrion | 34.93 | 31.39 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 33.52 | 31.07 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 32.96 | 30.39 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 36.62 | 30.37 |
| OQU85473 | Sorghum | nucleus | 31.27 | 30.33 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 32.68 | 30.29 |
| AT3G07650.1 | Thale cress | nucleus | 21.97 | 20.97 |
| AT2G47890.1 | Thale cress | nucleus | 19.15 | 20.48 |
| AT5G48250.1 | Thale cress | nucleus | 20.85 | 19.84 |
| AT4G15250.1 | Thale cress | nucleus | 18.03 | 19.39 |
| AT2G33500.1 | Thale cress | nucleus | 21.41 | 18.91 |
| AT3G21880.2 | Thale cress | nucleus | 18.87 | 18.21 |
| AT1G28050.1 | Thale cress | nucleus | 20.0 | 16.4 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 12.96 | 11.95 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:835872 | ProteinID:AED96933.1 | ArrayExpress:AT5G57660 | EnsemblPlantsGene:AT5G57660 | RefSeq:AT5G57660 |
| TAIR:AT5G57660 | RefSeq:AT5G57660-TAIR-G | EnsemblPlants:AT5G57660.1 | TAIR:AT5G57660.1 | Symbol:ATCOL5 | EMBL:AY057632 |
| EMBL:AY080747 | EMBL:AY088432 | EMBL:AY114006 | Unigene:At.20797 | ProteinID:BAB09583.1 | InterPro:CCT_domain |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009416 | GO:GO:0009628 |
| GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 | GO:GO:0009987 | GO:GO:0045892 | GO:GO:0046872 |
| GO:GO:0048571 | GO:GO:0048572 | GO:GO:0048576 | GO:GO:0048579 | InterPro:IPR000315 | InterPro:IPR010402 |
| RefSeq:NP_568863.1 | PFAM:PF00643 | PFAM:PF06203 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020003 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50119 | PFscan:PS51017 |
| PANTHER:PTHR31319 | PANTHER:PTHR31319:SF14 | UniProt:Q9FHH8 | SMART:SM00336 | UniParc:UPI000009C997 | InterPro:Znf_B-box |
| SEG:seg | : | : | : | : | : |
Description
COL5Zinc finger protein CONSTANS-LIKE 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH8]
Coordinates
chr5:+:23355337..23356989
Molecular Weight (calculated)
38822.2 Da
IEP (calculated)
6.428
GRAVY (calculated)
-0.292
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDSAF LCIACDTRIH SFTRHERVWV CEVCEQAPAA VTCKADAAAL CVSCDADIHS ANPLASRHER
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
101: VPVETFFDSA ETAVAKISAS STFGILGSST TVDLTAVPVM ADDLGLCPWL LPNDFNEPAK IEIGTENMKG SSDFMFSDFD RLIDFEFPNS FNHHQNNAGG
201: DSLVPVQTKT EPLPLTNNDH CFDIDFCRSK LSAFTYPSQS VSHSVSTSSI EYGVVPDGNT NNSVNRSTIT SSTTGGDHQA SSMDREARVL RYREKRKNRK
301: FEKTIRYASR KAYAESRPRI KGRFAKRTET ENDDIFLSHV YASAAHAQYG VVPTF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.