Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64255 | Canola | nucleus | 71.47 | 70.89 |
| CDY55657 | Canola | nucleus | 72.55 | 69.17 |
| Bra023858.1-P | Field mustard | nucleus | 72.28 | 68.91 |
| AT4G15250.1 | Thale cress | nucleus | 51.9 | 57.88 |
| KRH26833 | Soybean | nucleus | 46.74 | 40.66 |
| KRH22524 | Soybean | nucleus | 45.38 | 39.48 |
| Solyc05g046040.1.1 | Tomato | nucleus | 44.02 | 38.66 |
| PGSC0003DMT400003198 | Potato | nucleus | 44.29 | 38.63 |
| VIT_12s0059g02500.t01 | Wine grape | nucleus | 44.02 | 37.33 |
| AT5G48250.1 | Thale cress | nucleus | 32.61 | 32.17 |
| AT3G07650.1 | Thale cress | nucleus | 32.34 | 31.99 |
| VIT_19s0014g05120.t01 | Wine grape | nucleus | 24.46 | 24.0 |
| AT3G02380.1 | Thale cress | nucleus | 21.2 | 22.48 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 17.93 | 22.45 |
| AT5G15850.1 | Thale cress | nucleus | 20.65 | 21.41 |
| AT2G47890.1 | Thale cress | nucleus | 19.29 | 21.39 |
| AT5G24930.1 | Thale cress | nucleus | 19.84 | 20.17 |
| AT2G33500.1 | Thale cress | nucleus | 22.01 | 20.15 |
| AT5G15840.1 | Thale cress | nucleus | 19.84 | 19.57 |
| AT1G68190.2 | Thale cress | extracellular, golgi, vacuole | 20.38 | 19.48 |
| AT1G28050.1 | Thale cress | nucleus | 22.28 | 18.94 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 18.21 | 18.87 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:821743 | UniProt:A0A1I9LPX4 | ProteinID:ANM64631.1 | ProteinID:ANM64632.1 | ArrayExpress:AT3G21880 |
| EnsemblPlantsGene:AT3G21880 | RefSeq:AT3G21880 | TAIR:AT3G21880 | RefSeq:AT3G21880-TAIR-G | EnsemblPlants:AT3G21880.2 | Unigene:At.53422 |
| InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:IPR010402 | RefSeq:NP_001326646.1 |
| RefSeq:NP_188826.2 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF27 |
| SMART:SM00336 | UniParc:UPI000848D590 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX4]
Coordinates
chr3:+:7706257..7708346
Molecular Weight (calculated)
40875.0 Da
IEP (calculated)
5.555
GRAVY (calculated)
-0.485
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPSMEPKCD HCATSQALIY CKSDLAKLCL NCDVHVHSAN PLSHRHIRSL ICEKCFSQPA AIRCLDEKVS YCQGCHWHES NCSELGHRVQ SLNPFSGCPS
101: PTDFNRMWSS ILEPPVSGLL SPFVGSFPLN DLNNTMFDTA YSMVPHNISY TQNFSDNLSF FSTESKGYPD MVLKLEEGEE DLCEGLNLDD APLNFDVGDD
201: IIGCSSEVHI EPDHTVPNCL LIDKTNTSSF TGSNFTVDKA LEASPPGQQM NINTGLQLPL SPVLFGQIHP SLNITGENNA ADYQDCGMSP GFIMSEAPWE
301: TNFEVSCPQA RNEAKLRYKE KKLKRSFGKQ IRYASRKARA DTRKRVKGRF VKAGDSYDYD PSSPTTNN
101: PTDFNRMWSS ILEPPVSGLL SPFVGSFPLN DLNNTMFDTA YSMVPHNISY TQNFSDNLSF FSTESKGYPD MVLKLEEGEE DLCEGLNLDD APLNFDVGDD
201: IIGCSSEVHI EPDHTVPNCL LIDKTNTSSF TGSNFTVDKA LEASPPGQQM NINTGLQLPL SPVLFGQIHP SLNITGENNA ADYQDCGMSP GFIMSEAPWE
301: TNFEVSCPQA RNEAKLRYKE KKLKRSFGKQ IRYASRKARA DTRKRVKGRF VKAGDSYDYD PSSPTTNN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.