Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55657 | Canola | nucleus | 97.57 | 93.78 |
| Bra023858.1-P | Field mustard | nucleus | 97.3 | 93.52 |
| AT3G21880.2 | Thale cress | nucleus | 70.89 | 71.47 |
| KRH26833 | Soybean | nucleus | 47.17 | 41.37 |
| KRH22524 | Soybean | nucleus | 46.63 | 40.9 |
| Solyc05g046040.1.1 | Tomato | nucleus | 43.4 | 38.42 |
| PGSC0003DMT400003198 | Potato | nucleus | 43.4 | 38.15 |
| VIT_12s0059g02500.t01 | Wine grape | nucleus | 43.13 | 36.87 |
| CDY48743 | Canola | nucleus | 30.46 | 32.29 |
| CDY05691 | Canola | nucleus | 29.65 | 31.7 |
| CDY07979 | Canola | nucleus | 29.65 | 31.25 |
| CDX85321 | Canola | nucleus | 30.19 | 31.2 |
| CDY35952 | Canola | nucleus | 31.0 | 31.17 |
| CDX86318 | Canola | nucleus | 29.92 | 31.01 |
| CDY22125 | Canola | nucleus | 30.46 | 30.87 |
| CDY28029 | Canola | nucleus | 30.73 | 30.65 |
| CDX74034 | Canola | nucleus | 29.92 | 28.46 |
| CDY69474 | Canola | nucleus, plastid | 7.28 | 28.12 |
| CDY15696 | Canola | nucleus | 19.68 | 25.26 |
| VIT_19s0014g05120.t01 | Wine grape | nucleus | 23.99 | 23.73 |
| CDY02749 | Canola | nucleus, plastid | 16.44 | 23.55 |
| CDY19821 | Canola | nucleus | 18.6 | 23.47 |
| CDX88145 | Canola | nucleus | 18.33 | 23.13 |
| CDX80141 | Canola | nucleus | 20.22 | 22.59 |
| CDY45597 | Canola | nucleus | 17.52 | 22.49 |
| CDY53026 | Canola | nucleus | 20.22 | 22.46 |
| CDY36171 | Canola | nucleus | 17.52 | 22.41 |
| CDY11755 | Canola | nucleus | 23.18 | 21.88 |
| CDX87105 | Canola | nucleus, plastid | 18.6 | 21.77 |
| CDY68819 | Canola | nucleus | 22.64 | 21.71 |
| CDY30385 | Canola | nucleus | 22.64 | 21.71 |
| CDX90969 | Canola | nucleus | 18.6 | 21.5 |
| CDX85529 | Canola | nucleus | 18.33 | 21.45 |
| CDY04213 | Canola | nucleus | 19.41 | 21.43 |
| CDY71884 | Canola | nucleus | 16.71 | 21.02 |
| CDX80476 | Canola | nucleus, plastid | 18.6 | 20.97 |
| CDY71818 | Canola | nucleus | 16.71 | 20.95 |
| CDY66639 | Canola | nucleus | 22.37 | 20.6 |
| CDX90119 | Canola | nucleus | 23.18 | 20.53 |
| CDX69493 | Canola | nucleus | 18.33 | 20.18 |
| CDY26470 | Canola | nucleus | 17.79 | 19.82 |
| CDY26469 | Canola | nucleus | 19.41 | 19.67 |
| CDY58843 | Canola | nucleus, plastid | 18.06 | 19.59 |
| CDX69494 | Canola | nucleus | 19.41 | 19.57 |
| CDY25892 | Canola | nucleus | 17.52 | 19.52 |
| CDX91989 | Canola | nucleus | 10.78 | 17.54 |
| CDX74261 | Canola | nucleus | 10.51 | 17.11 |
| CDY49730 | Canola | nucleus | 9.43 | 16.05 |
| CDY07393 | Canola | nucleus | 21.02 | 14.55 |
| CDY48428 | Canola | nucleus | 10.24 | 14.07 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078JDC3 | UniProt:A0A078JDC3 | InterPro:CCT_domain | EnsemblPlants:CDY64255 | ProteinID:CDY64255 |
| ProteinID:CDY64255.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00041046001 | InterPro:IPR000315 | InterPro:IPR010402 |
| PFAM:PF06203 | PFscan:PS51017 | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF27 | SMART:SM00336 | UniParc:UPI0004EE04C5 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
BnaCnng43560DBnaCnng43560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDC3]
Coordinates
chrLK034429:-:19039..20457
Molecular Weight (calculated)
41296.8 Da
IEP (calculated)
6.404
GRAVY (calculated)
-0.505
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPKCDYCAT TQAIIYCKYD LAKLCLKCDV HVHSPNPLSR RHMRSLICEK CFSQPAVIRC LDQKVSYCQG CQWHVRSCSA LGHRLQSLEP FSGCPSPTEF
101: SRMWSSILEP SVSSLVNPSI GSLPSLDDLI GSSYSMMSQN ITYIQNLSDQ SSFFSGDSKG CPHLILKLEE GEEDLCEGLN LDNAPLNFDV GDDIICCSPQ
201: EHIESDQTLP NGLLAYKNII SVTDSNCTTD NPLEATSTGQ QECRSYHQSG PLQMNINIGL PLPTSPILFG QINPNIKGHE STAVDYQDCG MSTGFIMSDS
301: PWESNLEVGS PQTRNEAKLR YKEKKLKRTF GKQIRYASRK ARADTRKRVK GRFVKAGDNY DYDPSSPTTN Q
101: SRMWSSILEP SVSSLVNPSI GSLPSLDDLI GSSYSMMSQN ITYIQNLSDQ SSFFSGDSKG CPHLILKLEE GEEDLCEGLN LDNAPLNFDV GDDIICCSPQ
201: EHIESDQTLP NGLLAYKNII SVTDSNCTTD NPLEATSTGQ QECRSYHQSG PLQMNINIGL PLPTSPILFG QINPNIKGHE STAVDYQDCG MSTGFIMSDS
301: PWESNLEVGS PQTRNEAKLR YKEKKLKRTF GKQIRYASRK ARADTRKRVK GRFVKAGDNY DYDPSSPTTN Q
001: MEPKCDHCAT SQALIYCKSD LAKLCLNCDV HVHSANPLSH RHIRSLICEK CFSQPAAIRC LDEKVSYCQG CHWHESNCSE LGHRVQSLNP FSGCPSPTDF
101: NRMWSSILEP PVSGLLSPFV GSFPLNDLNN TMFDTAYSMV PHNISYTQNF SDNLSFFSTE SKGYPDMVLK LEEGEEDLCE GLNLDDAPLN FDVGDDIIGC
201: SSEVHIEPDH TVPNCLLIDK TNTSSFTGSN FTVDKALEAS PPGQQMNINT GLQLPLSPVL FGQIHPSLNI TGENNAADYQ DCGMSPGFIM SEAPWETNFE
301: VSCPQARNEA KLRYKEKKLK RSFGKQIRYA SRKARADTRK RVKGRFVKAG DSYDYDPSSP TTNN
101: NRMWSSILEP PVSGLLSPFV GSFPLNDLNN TMFDTAYSMV PHNISYTQNF SDNLSFFSTE SKGYPDMVLK LEEGEEDLCE GLNLDDAPLN FDVGDDIIGC
201: SSEVHIEPDH TVPNCLLIDK TNTSSFTGSN FTVDKALEAS PPGQQMNINT GLQLPLSPVL FGQIHPSLNI TGENNAADYQ DCGMSPGFIM SEAPWETNFE
301: VSCPQARNEA KLRYKEKKLK RSFGKQIRYA SRKARADTRK RVKGRFVKAG DSYDYDPSSP TTNN
Arabidopsis Description
B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LPX4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.