Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24790.1 | CDY12145 | AT2G32950.1 | 16339850 |
| AT2G24790.1 | CDY52540 | AT2G32950.1 | 16339850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45597 | Canola | nucleus | 93.45 | 93.77 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 78.28 | 77.21 |
| CDY19821 | Canola | nucleus | 60.0 | 59.18 |
| CDX88145 | Canola | nucleus | 58.28 | 57.48 |
| CDX87105 | Canola | nucleus, plastid | 60.34 | 55.2 |
| CDX80476 | Canola | nucleus, plastid | 59.31 | 52.28 |
| CDY02749 | Canola | nucleus, plastid | 42.41 | 47.49 |
| CDY69474 | Canola | nucleus, plastid | 15.52 | 46.88 |
| VIT_11s0052g01800.t01 | Wine grape | nucleus, plastid | 58.28 | 46.81 |
| CDY58843 | Canola | nucleus, plastid | 49.31 | 41.81 |
| CDY25892 | Canola | nucleus | 46.9 | 40.84 |
| CDX69493 | Canola | nucleus | 46.9 | 40.36 |
| CDY26470 | Canola | nucleus | 46.21 | 40.24 |
| CDX85529 | Canola | nucleus | 43.79 | 40.06 |
| CDY71884 | Canola | nucleus | 40.34 | 39.66 |
| CDX90969 | Canola | nucleus | 42.76 | 38.63 |
| CDY71818 | Canola | nucleus | 39.31 | 38.51 |
| CDY49730 | Canola | nucleus | 27.93 | 37.16 |
| CDX74261 | Canola | nucleus | 27.59 | 35.09 |
| CDX69494 | Canola | nucleus | 43.45 | 34.24 |
| CDY26469 | Canola | nucleus | 43.1 | 34.15 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 42.41 | 33.33 |
| CDX91989 | Canola | nucleus | 25.86 | 32.89 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 41.38 | 32.52 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 41.38 | 32.43 |
| OQU85473 | Sorghum | nucleus | 37.59 | 29.78 |
| Os06t0275000-01 | Rice | mitochondrion | 39.66 | 29.11 |
| EER88227 | Sorghum | nucleus | 40.69 | 28.71 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 37.59 | 28.46 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 37.24 | 28.2 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 41.03 | 27.8 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 36.9 | 27.79 |
| CDY15696 | Canola | nucleus | 25.17 | 25.26 |
| CDY53026 | Canola | nucleus | 25.86 | 22.46 |
| CDX80141 | Canola | nucleus | 25.52 | 22.29 |
| CDY35952 | Canola | nucleus | 26.55 | 20.87 |
| CDY07979 | Canola | nucleus | 25.17 | 20.74 |
| CDY28029 | Canola | nucleus | 26.55 | 20.7 |
| CDY11755 | Canola | nucleus | 27.93 | 20.61 |
| CDY66639 | Canola | nucleus | 28.62 | 20.6 |
| CDY30385 | Canola | nucleus | 26.9 | 20.16 |
| CDY68819 | Canola | nucleus | 26.9 | 20.16 |
| CDY22125 | Canola | nucleus | 25.17 | 19.95 |
| CDY05691 | Canola | nucleus | 23.79 | 19.88 |
| CDY48743 | Canola | nucleus | 23.79 | 19.71 |
| CDX90119 | Canola | nucleus | 27.24 | 18.85 |
| CDX74034 | Canola | nucleus | 25.17 | 18.72 |
| CDX86318 | Canola | nucleus | 22.76 | 18.44 |
| CDX85321 | Canola | nucleus | 22.76 | 18.38 |
| CDY64255 | Canola | nucleus | 22.41 | 17.52 |
| CDY55657 | Canola | nucleus | 22.76 | 17.1 |
| CDY04213 | Canola | nucleus | 19.31 | 16.67 |
| CDY48428 | Canola | nucleus | 12.41 | 13.33 |
| CDY07393 | Canola | nucleus | 19.66 | 10.63 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078HEG6 | UniProt:A0A078HEG6 | InterPro:CCT_domain | EnsemblPlants:CDY36171 | ProteinID:CDY36171 |
| ProteinID:CDY36171.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00060034001 | InterPro:IPR000315 | InterPro:IPR010402 |
| PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF39 |
| SMART:SM00336 | UniParc:UPI0004EE3912 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
BnaC04g37230DBnaC04g37230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEG6]
Coordinates
chrLK032368:-:157617..158883
Molecular Weight (calculated)
31419.0 Da
IEP (calculated)
8.046
GRAVY (calculated)
-0.320
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRPCDSCR SAAATLFCRA DAAFLCGECD GKIHSANKLA SRHERVWLCQ VCEQSPAHVT CKADAAALCV TCDRDIHSAN PLSRRHERVP VTPFYDAPSA
101: QGGSMEAASW LLPNSSVKEG VVEIPNLFAD LDYSAVVDPK MEASENSSGN DGVVPVQTKA LFLSEDYFSF DISASKTTFP HGFSCINQTV SSTSLDVPLV
201: PEGGAVAEIS RTAATPAVQL SPAEREARVL RYREKRKNRK FEKTIRYASR KAYAEVRPRI KGRFAKRTDS RVNDGGDGGV YGGFGVVPSF
101: QGGSMEAASW LLPNSSVKEG VVEIPNLFAD LDYSAVVDPK MEASENSSGN DGVVPVQTKA LFLSEDYFSF DISASKTTFP HGFSCINQTV SSTSLDVPLV
201: PEGGAVAEIS RTAATPAVQL SPAEREARVL RYREKRKNRK FEKTIRYASR KAYAEVRPRI KGRFAKRTDS RVNDGGDGGV YGGFGVVPSF
001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
Arabidopsis Description
COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.