Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G24790.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 16339850 |
| AT2G24790.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 16339850 |
| AT2G24790.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 16339850 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G213000.2 | Wheat | nucleus | 95.82 | 95.82 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 96.08 | 95.58 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 56.66 | 58.65 |
| CDY02749 | Canola | nucleus, plastid | 27.42 | 40.54 |
| CDY19821 | Canola | nucleus | 30.03 | 39.12 |
| CDX88145 | Canola | nucleus | 29.5 | 38.44 |
| TraesCS2B01G372000.1 | Wheat | nucleus | 31.85 | 38.24 |
| VIT_04s0008g07340.t01 | Wine grape | nucleus, plastid | 34.46 | 38.04 |
| Bra032061.1-P | Field mustard | nucleus | 28.46 | 37.72 |
| CDY45597 | Canola | nucleus | 28.46 | 37.72 |
| TraesCS6B01G248400.1 | Wheat | nucleus | 31.59 | 37.69 |
| CDY36171 | Canola | nucleus | 28.2 | 37.24 |
| CDX87105 | Canola | nucleus, plastid | 29.77 | 35.96 |
| AT2G24790.1 | Thale cress | nucleus, plastid | 27.42 | 35.71 |
| CDX80476 | Canola | nucleus, plastid | 30.55 | 35.56 |
| VIT_11s0052g01800.t01 | Wine grape | nucleus, plastid | 33.42 | 35.46 |
| Bra036528.1-P | Field mustard | nucleus | 31.07 | 34.49 |
| Bra009805.1-P | Field mustard | nucleus | 31.59 | 34.47 |
| AT5G24930.1 | Thale cress | nucleus | 32.38 | 34.25 |
| Bra020425.1-P | Field mustard | nucleus, plastid | 29.77 | 33.33 |
| CDY58843 | Canola | nucleus, plastid | 29.77 | 33.33 |
| TraesCS7B01G032800.1 | Wheat | nucleus | 20.89 | 32.92 |
| KRH18980 | Soybean | nucleus | 31.33 | 32.88 |
| CDY25892 | Canola | nucleus | 28.46 | 32.73 |
| AT5G57660.1 | Thale cress | nucleus, plastid | 30.29 | 32.68 |
| KRH02915 | Soybean | nucleus | 31.85 | 32.62 |
| Bra002709.1-P | Field mustard | nucleus | 18.02 | 31.65 |
| CDY49730 | Canola | nucleus | 18.02 | 31.65 |
| TraesCS5B01G163500.1 | Wheat | nucleus | 26.37 | 31.08 |
| PGSC0003DMT400070680 | Potato | nucleus | 30.55 | 30.39 |
| Solyc07g006630.2.1 | Tomato | nucleus | 30.55 | 30.31 |
| TraesCS6B01G179000.2 | Wheat | mitochondrion | 28.72 | 29.33 |
| TraesCS7B01G400600.1 | Wheat | nucleus | 27.94 | 28.76 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 20.63 | 20.26 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 17.23 | 16.62 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 16.19 | 16.02 |
| TraesCS7B01G161500.1 | Wheat | nucleus | 19.58 | 15.37 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 13.05 | 14.84 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G118300.1 | EnsemblPlantsGene:TraesCS7B01G118300 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | ncoils:Coil | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF38 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr7B:+:137793403..137796757
Molecular Weight (calculated)
42117.0 Da
IEP (calculated)
6.693
GRAVY (calculated)
-0.444
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCVSNGTVY EEAVGREGSW ARLCDGCCAV PSVVYCRADS AYLCASCDAQ IHAANRVASR HERVLLSEAY KHAPVVLECH ADAAALCAAY EAQVHYTNLL
101: AAMHQRVPVV SHPAAAIPGA SLFAEAAATP PVLGRKEEDA SWLLLSKDSD NHNHSGNNSS SSSTSRYFGE VDQYFDLVGY NSYYDSRMSN QEQYVMQEQQ
201: HLQQMQKEYA EQQMQKEYVE KEGSECIVPS QSAIVSRPHQ SGYAPLVGAE QAASVTAGVS AYTDSVNNSI SFSMEAGIVP DNTVQSSILR PAGAIGLFSS
301: PSLQTPLHLS SKEREARVLR YKEKKKSRKF EKTTRYATRK AYAEARPRIK GRFAKRSDAE MEVDQTFSTA ALSDSSYSTV HWF
101: AAMHQRVPVV SHPAAAIPGA SLFAEAAATP PVLGRKEEDA SWLLLSKDSD NHNHSGNNSS SSSTSRYFGE VDQYFDLVGY NSYYDSRMSN QEQYVMQEQQ
201: HLQQMQKEYA EQQMQKEYVE KEGSECIVPS QSAIVSRPHQ SGYAPLVGAE QAASVTAGVS AYTDSVNNSI SFSMEAGIVP DNTVQSSILR PAGAIGLFSS
301: PSLQTPLHLS SKEREARVLR YKEKKKSRKF EKTTRYATRK AYAEARPRIK GRFAKRSDAE MEVDQTFSTA ALSDSSYSTV HWF
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
Arabidopsis Description
COL2Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.