Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G131700.1 | Wheat | nucleus | 93.42 | 90.8 |
| TraesCS7A01G132100.1 | Wheat | nucleus | 92.18 | 89.96 |
| HORVU7Hr1G027560.1 | Barley | nucleus | 87.65 | 86.23 |
| Zm00001d024200_P001 | Maize | nucleus | 67.9 | 59.35 |
| EES14798 | Sorghum | nucleus | 71.19 | 59.25 |
| Zm00001d049347_P001 | Maize | nucleus | 64.2 | 55.91 |
| Os08t0249000-01 | Rice | nucleus | 37.45 | 50.56 |
| TraesCS6B01G248400.1 | Wheat | nucleus | 40.74 | 30.84 |
| TraesCS5B01G163500.1 | Wheat | nucleus | 37.45 | 28.0 |
| TraesCS2B01G372000.1 | Wheat | nucleus | 36.63 | 27.9 |
| TraesCS7B01G400600.1 | Wheat | nucleus | 36.21 | 23.66 |
| TraesCS6B01G179000.2 | Wheat | mitochondrion | 35.8 | 23.2 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 34.16 | 22.43 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 32.92 | 20.89 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 20.99 | 13.08 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 20.16 | 12.66 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 17.28 | 10.58 |
| TraesCS7B01G161500.1 | Wheat | nucleus | 20.16 | 10.04 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 8.23 | 5.93 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G032800.1 | EnsemblPlantsGene:TraesCS7B01G032800 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF35 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 |
| SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7B:-:32663618..32664734
Molecular Weight (calculated)
24989.9 Da
IEP (calculated)
6.263
GRAVY (calculated)
-0.145
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEGSTSPN GGAPCAVCGG AAALYCPADA AALCVPCDAA VHSANPLASR HERVPLAAAV AATSGVYDLF AADDEGGSSW PGQGSPSSGS SGFSNGGGVE
101: MSLFDLLSDV DLVATGAGGS MLSDGPLWLQ PGLAADASAA WTSSWSPAEA VVVPSAADRA ERVRRYREKR KNRKFQKTIR YASRKAYAEA RPRIKGRFVK
201: RPAAVSVDDD NTSAAEAAAK FWLSFSDNSV GFQVASHGVV PSF
101: MSLFDLLSDV DLVATGAGGS MLSDGPLWLQ PGLAADASAA WTSSWSPAEA VVVPSAADRA ERVRRYREKR KNRKFQKTIR YASRKAYAEA RPRIKGRFVK
201: RPAAVSVDDD NTSAAEAAAK FWLSFSDNSV GFQVASHGVV PSF
001: MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
101: GPAKSASSSV NFVDEDGGDV TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS KISQQGFNFI NQTVSTRTID
201: VPLVPESGGV TAEMTNTETP AVQLSPAERE ARVLRYREKR KNRKFEKTIR YASRKAYAEM RPRIKGRFAK RTDSRENDGG DVGVYGGFGV VPSF
Arabidopsis Description
COL3Zinc finger protein CONSTANS-LIKE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK53]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.