Factsheet for TraesCS4B01G155800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G167300.1	Wheat	nucleus	95.97	95.97
TraesCS4A01G140600.1	Wheat	nucleus	85.89	82.77
HORVU4Hr1G048700.1	Barley	nucleus, plastid	83.63	71.24
Os03t0351100-01	Rice	nucleus	64.99	64.02
Zm00001d029149_P001	Maize	nucleus	61.21	61.21
EER94860	Sorghum	nucleus	63.48	61.02
TraesCS2B01G140300.1	Wheat	nucleus	44.08	45.22
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	8.06	35.96
KRH68113	Soybean	nucleus	28.46	32.38
KRG96381	Soybean	nucleus	28.21	31.91
AT2G47890.1	Thale cress	nucleus	26.45	31.63
KRH31920	Soybean	nucleus	26.95	30.75
VIT_07s0104g01360.t01	Wine grape	nucleus	30.48	30.71
KRH71535	Soybean	nucleus	26.2	30.59
Solyc09g074560.2.1	Tomato	nucleus	28.72	30.56
PGSC0003DMT400029591	Potato	nucleus	28.72	30.08
CDY53026	Canola	nucleus	24.43	29.04
Bra004423.1-P	Field mustard	nucleus	24.18	28.74
CDX80141	Canola	nucleus	23.93	28.61
TraesCS6B01G248400.1	Wheat	nucleus	17.63	21.81
TraesCS2B01G372000.1	Wheat	nucleus	17.38	21.63
TraesCS7B01G161500.1	Wheat	nucleus	26.45	21.52
TraesCS6B01G315400.1	Wheat	nucleus	20.65	21.03
TraesCS7B01G032800.1	Wheat	nucleus	10.58	17.28
TraesCS7B01G118300.1	Wheat	nucleus	16.62	17.23
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	14.36	16.91
TraesCS6B01G319500.1	Wheat	nucleus	15.62	16.76
TraesCS6B01G179000.2	Wheat	mitochondrion	15.11	16.0
TraesCS7B01G400600.1	Wheat	nucleus	14.61	15.59
TraesCS5B01G163500.1	Wheat	nucleus	12.09	14.77

Protein Annotations

EnsemblPlants:TraesCS4B01G155800.1	EnsemblPlantsGene:TraesCS4B01G155800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:CCT_domain	InterPro:IPR000315	InterPro:IPR010402
InterPro:Znf_B-box	PANTHER:PTHR31717	PANTHER:PTHR31717:SF10	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
SEG:seg	SMART:SM00336	TIGR:cd00021	MapMan:15.5.1.2	:	:

Description

No Description!

Coordinates

chr4B:-:281732548..281736182

Molecular Weight (calculated)

43630.1 Da

IEP (calculated)

6.498

GRAVY (calculated)

-0.540

Length

397 amino acids

Sequence
(BLAST)

001: MEKELSADAL ACDYCSGPQA VVYCRADSAR LCLPCDRLVH AANAVCSRHL RALLCAACRA TGAVFRHAGT EFLCSNCDFG RSRDAELPLH DRCTVQGYTG
101: RPSAHDLAAL LGVPDFDKPS AGKADDGWWA IWEEPQVFRL EDLIVPTTSC HGFQPLVTPS SPKVHDMLAV CQNSPVFCSC SEFSHLALTH LQKIHNSPDG
201: KTNDEVIRQL RELAEVDMGS GQITPREEAE QAAHQLPSWT ESQHTTGNGD FGIDNSHEVA TMPTPGYENG GWNNNDYHAL NGASKTEYEQ KQAPASSAEA
301: CLSSFVQMSE LCPSMSNGSM MDDGQQANPG TGMPMQAFPK RSGFDVVAGP DRDIVISRYK EKRRTRRFDK QVRYESRKAR ADSRLRIKGR FAKANQS

Best Arabidopsis Sequence Match ( AT5G48250.1 )
(BLAST)

001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY

Arabidopsis Description

COL10Zinc finger protein CONSTANS-LIKE 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.