Factsheet for TraesCS2B01G140300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G121400.1	Wheat	nucleus	87.86	89.24
TraesCS2A01G119600.1	Wheat	nucleus	86.56	87.7
TraesCS4B01G155800.1	Wheat	nucleus	45.22	44.08
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	8.53	37.08
KRH31920	Soybean	nucleus	28.17	31.32
AT2G47890.1	Thale cress	nucleus	26.61	31.02
KRH68113	Soybean	nucleus	27.39	30.37
Solyc09g074560.2.1	Tomato	nucleus	29.2	30.29
KRG96381	Soybean	nucleus	27.39	30.2
PGSC0003DMT400029591	Potato	nucleus	29.2	29.82
KRH71535	Soybean	nucleus	26.1	29.71
VIT_07s0104g01360.t01	Wine grape	nucleus	30.23	29.7
Bra004423.1-P	Field mustard	nucleus	25.58	29.64
CDX80141	Canola	nucleus	25.32	29.52
CDY53026	Canola	nucleus	25.32	29.34
TraesCS6B01G315400.1	Wheat	nucleus	23.77	23.59
TraesCS6B01G248400.1	Wheat	nucleus	19.38	23.36
TraesCS7B01G161500.1	Wheat	nucleus	28.68	22.75
TraesCS2B01G372000.1	Wheat	nucleus	18.09	21.94
TraesCS7B01G032800.1	Wheat	nucleus	12.66	20.16
TraesCS7B01G125500.1	Wheat	cytosol, nucleus, plastid	15.76	18.1
TraesCS6B01G319500.1	Wheat	nucleus	16.8	17.57
TraesCS7B01G400600.1	Wheat	nucleus	16.54	17.2
TraesCS6B01G179000.2	Wheat	mitochondrion	16.02	16.53
TraesCS7B01G118300.1	Wheat	nucleus	16.02	16.19
TraesCS5B01G163500.1	Wheat	nucleus	12.92	15.38

Protein Annotations

EnsemblPlants:TraesCS2B01G140300.1	EnsemblPlantsGene:TraesCS2B01G140300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:CCT_domain	InterPro:IPR000315	InterPro:IPR010402
InterPro:Znf_B-box	PANTHER:PTHR31717	PANTHER:PTHR31717:SF10	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
SEG:seg	SMART:SM00336	TIGR:cd00021	MapMan:15.5.1.2	:	:

Description

No Description!

Coordinates

chr2B:+:106954487..106956522

Molecular Weight (calculated)

40386.4 Da

IEP (calculated)

5.419

GRAVY (calculated)

-0.183

Length

387 amino acids

Sequence
(BLAST)

001: MSASGAVPGA AAGAVAVPTG ECYFCAGAPA VVYCRADAAG LCLPCDRHVH GANTVSCRHA RAPLCAVCRA AAATVRRGAA RFLCSNCDFE EQQHGEGELT
101: EPPPLLHDRG TVEGYTGCPS VGELAAILGV FLGDKAAEAW WPLWEEPQVL SFDDVVVPTT ACHGLQPLLI SSPKNRSPPC GELDGEVLRQ LGELAKSEEA
201: AAYVEDPEPA GVDQLPLWGS SDCAAIGHGD LGTPGGEAIC AAAILHVPPY QQLQEAWIAT SCNELPEQVS ASSSAEPSLS SFVEVSEVCP SLSRSGSSAD
301: DAANAGHDHP SPAAAPVAAT PAQAQAAAQA TKKVGGYDVV YPDRGKVISR YKEKRKNRMF GKQIRYESRK ARADGRVRIN GRFAKSS

Best Arabidopsis Sequence Match ( AT2G47890.1 )
(BLAST)

001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP

Arabidopsis Description

COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.