Factsheet for TraesCS2D01G121400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G119600.1	Wheat	nucleus	89.76	89.53
TraesCS2B01G140300.1	Wheat	nucleus	89.24	87.86
TraesCS4D01G167300.1	Wheat	nucleus	44.88	43.07
GSMUA_Achr6P13590_001	Banana	cytosol, mitochondrion, nucleus	8.66	37.08
KRH31920	Soybean	nucleus	28.35	31.03
KRH68113	Soybean	nucleus	28.35	30.95
KRG96381	Soybean	nucleus	28.35	30.77
AT2G47890.1	Thale cress	nucleus	26.77	30.72
Solyc09g074560.2.1	Tomato	nucleus	29.66	30.29
PGSC0003DMT400029591	Potato	nucleus	29.92	30.08
KRH71535	Soybean	nucleus	26.77	30.0
Bra004423.1-P	Field mustard	nucleus	25.98	29.64
CDX80141	Canola	nucleus	25.72	29.52
CDY53026	Canola	nucleus	25.72	29.34
VIT_07s0104g01360.t01	Wine grape	nucleus	29.66	28.68
TraesCS6D01G202000.1	Wheat	nucleus	19.95	23.97
TraesCS2D01G351900.1	Wheat	nucleus	18.64	22.26
TraesCS6D01G267100.1	Wheat	nucleus	22.83	22.19
TraesCS7D01G264300.1	Wheat	nucleus	27.82	21.68
TraesCS7D01G220300.1	Wheat	nucleus	22.31	21.46
TraesCS7D01G131700.1	Wheat	nucleus	12.6	19.2
TraesCS6D01G269500.1	Wheat	nucleus	17.32	17.89
TraesCS7D01G484400.1	Wheat	nucleus	17.06	17.47
TraesCS6D01G140900.1	Wheat	mitochondrion	16.54	17.31
TraesCS7D01G213000.2	Wheat	nucleus	16.01	15.93
TraesCS5D01G170700.1	Wheat	nucleus	12.6	14.77

Protein Annotations

EnsemblPlants:TraesCS2D01G121400.1	EnsemblPlantsGene:TraesCS2D01G121400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:CCT_domain	InterPro:IPR000315	InterPro:IPR010402
InterPro:Znf_B-box	PANTHER:PTHR31717	PANTHER:PTHR31717:SF10	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
SEG:seg	SMART:SM00336	TIGR:cd00021	MapMan:15.5.1.2	:	:

Description

No Description!

Coordinates

chr2D:+:70623057..70625575

Molecular Weight (calculated)

39970.9 Da

IEP (calculated)

5.996

GRAVY (calculated)

-0.186

Length

381 amino acids

Sequence
(BLAST)

001: MSGTGAVTVA VADAAATPTG ECYFCAGAPA VVYCRADAAG LCLPCDRHVH GANTVSCRHA RAPLCAVCRA AAATVRRGAA RFLCSNCDFE EQQHGELTQV
101: PLLHDRGMVE GYTGCPSVGE LAAILGIVVG DKAAEAWWPL WEEPQVLSFD DVVVPTTACH GLQPLLASSS PKNRSPPCGE LDGEVLRQLG ELAKSEEAAT
201: EPACVDQLPP PWGSSDYAAI GHGDLGALGA EAICTAAILH VPSCQQNQEA WIATSCNELP EQVSASSSAE PSLSSFVEVS DVCPGLSRSG SSSVDDATNA
301: GHDHPSPAAA PVTLQAQTAP AQATKKVGGY DVVYPDRGKV ISRYKEKRKN RMFGKQIRYE SRKARADGRV RINGRFAKSS Q

Best Arabidopsis Sequence Match ( AT2G47890.1 )
(BLAST)

001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP

Arabidopsis Description

COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.