Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH68113 | Soybean | nucleus | 49.75 | 56.16 |
| KRG96381 | Soybean | nucleus | 49.75 | 55.84 |
| Solyc09g074560.2.1 | Tomato | nucleus | 51.52 | 54.42 |
| PGSC0003DMT400029591 | Potato | nucleus | 52.28 | 54.35 |
| CDX80141 | Canola | nucleus | 42.13 | 50.0 |
| Bra004423.1-P | Field mustard | nucleus | 42.13 | 49.7 |
| CDY53026 | Canola | nucleus | 42.13 | 49.7 |
| AT2G47890.1 | Thale cress | nucleus | 41.12 | 48.8 |
| KRH31920 | Soybean | nucleus | 42.64 | 48.28 |
| KRH71535 | Soybean | nucleus | 40.61 | 47.06 |
| GSMUA_Achr6P13590_001 | Banana | cytosol, mitochondrion, nucleus | 7.87 | 34.83 |
| Os07t0667300-01 | Rice | nucleus | 31.47 | 32.63 |
| GSMUA_Achr3P08880_001 | Banana | nucleus | 32.99 | 31.86 |
| TraesCS4D01G167300.1 | Wheat | nucleus | 30.96 | 30.73 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 30.71 | 30.48 |
| Os03t0351100-01 | Rice | nucleus | 30.96 | 30.27 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 29.7 | 30.23 |
| EER94860 | Sorghum | nucleus | 31.47 | 30.02 |
| Zm00001d029149_P001 | Maize | nucleus | 30.2 | 29.97 |
| TraesCS4A01G140600.1 | Wheat | nucleus | 31.22 | 29.85 |
| TraesCS2A01G119600.1 | Wheat | nucleus | 28.93 | 29.84 |
| TraesCS2D01G121400.1 | Wheat | nucleus | 28.68 | 29.66 |
| Zm00001d007107_P001 | Maize | nucleus | 30.71 | 29.58 |
| EER99873 | Sorghum | nucleus | 29.44 | 28.09 |
| VIT_01s0146g00360.t01 | Wine grape | nucleus | 32.99 | 27.72 |
| HORVU4Hr1G048700.1 | Barley | nucleus, plastid | 31.98 | 27.04 |
| VIT_14s0068g01380.t01 | Wine grape | nucleus | 30.2 | 26.5 |
| Zm00001d022500_P001 | Maize | nucleus | 11.42 | 24.86 |
| VIT_04s0008g07340.t01 | Wine grape | nucleus, plastid | 20.3 | 23.05 |
| VIT_11s0052g01800.t01 | Wine grape | nucleus, plastid | 20.56 | 22.44 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 23.1 | 21.98 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 20.56 | 20.72 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 21.57 | 20.48 |
| HORVU2Hr1G020760.2 | Barley | cytosol, mitochondrion | 19.54 | 19.4 |
| VIT_19s0014g05120.t01 | Wine grape | nucleus | 18.27 | 19.2 |
| VIT_12s0059g02500.t01 | Wine grape | nucleus | 20.56 | 18.66 |
| VIT_01s0011g04240.t01 | Wine grape | nucleus | 16.24 | 17.93 |
Protein Annotations
| EntrezGene:100259713 | wikigene:100259713 | MapMan:15.5.1.2 | ProteinID:CCB56769 | ProteinID:CCB56769.1 | InterPro:CCT_domain |
| UniProt:F6HQ13 | EMBL:FN596005 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:IPR000315 | InterPro:IPR010402 | EMBL:KX986754 | EntrezGene:LOC100259713 |
| wikigene:LOC100259713 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31717 |
| PANTHER:PTHR31717:SF16 | SMART:SM00336 | TIGR:TC64342 | TIGR:TC68605 | UniParc:UPI00019837B0 | ArrayExpress:VIT_07s0104g01360 |
| EnsemblPlantsGene:VIT_07s0104g01360 | EnsemblPlants:VIT_07s0104g01360.t01 | unigene:Vvi.12091 | unigene:Vvi.12120 | RefSeq:XP_002268490 | RefSeq:XP_002268490.1 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
CONSTANS-like protein 13 [Source:UniProtKB/TrEMBL;Acc:F6HQ13]
Coordinates
chr7:-:2380332..2383547
Molecular Weight (calculated)
43920.6 Da
IEP (calculated)
6.226
GRAVY (calculated)
-0.533
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDSPGDNLH HRHEEEGQKM TIQNRLCDFC GDSMALLYCR ADSAKLCLSC DREVHSTNQL FTKHTRSRLC DVCDASPASI LCSTDNLVLC QNCDWAKHGR
101: SLSSAHDRRP LEGFSGQPSV TELLAFVGFE DLGKKSLFCG DESEVNEFLG CGVYESVGVD EEFSDFLVWD TPAVVNLDDL IVSTACDHNF QAMGVPPLPK
201: NRGAPCGQHK AEIIHQLRQL AKIELSFDFD HGDAKPPIGF QSHIPKQLIQ KENECNSCDH EVEFVFPTYE ASAFQWCSDG SEAANQVLPS VLLGSCADEK
301: CLVPRKHSDI GGSVSHTNGS DEGKSECPVV TKTLPALPKV SVHELNSQER DSAISRYKEK KKTRRYEKHI RYESRKARAE SRIRIKGRFA KMDH
101: SLSSAHDRRP LEGFSGQPSV TELLAFVGFE DLGKKSLFCG DESEVNEFLG CGVYESVGVD EEFSDFLVWD TPAVVNLDDL IVSTACDHNF QAMGVPPLPK
201: NRGAPCGQHK AEIIHQLRQL AKIELSFDFD HGDAKPPIGF QSHIPKQLIQ KENECNSCDH EVEFVFPTYE ASAFQWCSDG SEAANQVLPS VLLGSCADEK
301: CLVPRKHSDI GGSVSHTNGS DEGKSECPVV TKTLPALPKV SVHELNSQER DSAISRYKEK KKTRRYEKHI RYESRKARAE SRIRIKGRFA KMDH
001: MEAEEGHQRD RLCDYCDSSV ALVYCKADSA KLCLACDKQV HVANQLFAKH FRSLLCDSCN ESPSSLFCET ERSVLCQNCD WQHHTASSSL HSRRPFEGFT
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
101: GCPSVPELLA IVGLDDLTLD SGLLWESPEI VSLNDLIVSG GSGTHNFRAT DVPPLPKNRH ATCGKYKDEM IRQLRGLSRS EPGCLKFETP DAEIDAGFQF
201: LAPDLFSTCE LESGLKWFDQ QDHEDFPYCS LLKNLSESDE KPENVDRESS VMVPVSGCLN RCEEETVMVP VITSTRSMTH EINSLERNSA LSRYKEKKKS
301: RRYEKHIRYE SRKVRAESRT RIRGRFAKAA DP
Arabidopsis Description
COL13Zinc finger protein CONSTANS-LIKE 13 [Source:UniProtKB/Swiss-Prot;Acc:O82256]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.