Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19821 | Canola | nucleus | 56.48 | 66.67 |
| CDX87105 | Canola | nucleus, plastid | 58.5 | 64.04 |
| CDX88145 | Canola | nucleus | 54.18 | 63.95 |
| Bra036528.1-P | Field mustard | nucleus | 63.4 | 63.77 |
| Bra009805.1-P | Field mustard | nucleus | 63.98 | 63.25 |
| AT5G24930.1 | Thale cress | nucleus | 65.42 | 62.71 |
| CDX80476 | Canola | nucleus, plastid | 59.37 | 62.61 |
| VIT_11s0052g01800.t01 | Wine grape | nucleus, plastid | 59.94 | 57.62 |
| PGSC0003DMT400075520 | Potato | nucleus | 58.79 | 57.14 |
| Solyc08g006530.2.1 | Tomato | nucleus | 57.06 | 56.73 |
| PGSC0003DMT400067657 | Potato | nucleus | 56.48 | 56.48 |
| Solyc12g096500.1.1 | Tomato | nucleus | 57.93 | 56.15 |
| VIT_14s0083g00640.t01 | Wine grape | nucleus | 48.99 | 43.48 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 41.5 | 39.02 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 40.63 | 38.21 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 40.63 | 38.11 |
| EER88227 | Sorghum | nucleus | 42.07 | 35.52 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 38.04 | 34.46 |
| Os06t0275000-01 | Rice | mitochondrion | 39.19 | 34.43 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 37.75 | 34.2 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 37.75 | 34.03 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 41.21 | 33.41 |
| OQU85473 | Sorghum | nucleus | 35.16 | 33.33 |
| VIT_07s0104g01360.t01 | Wine grape | nucleus | 23.05 | 20.3 |
| VIT_12s0057g01350.t01 | Wine grape | nucleus | 24.21 | 20.24 |
| VIT_00s0194g00070.t01 | Wine grape | nucleus | 23.63 | 19.81 |
| VIT_01s0146g00360.t01 | Wine grape | nucleus | 24.5 | 18.12 |
| VIT_14s0068g01380.t01 | Wine grape | nucleus | 23.34 | 18.04 |
| VIT_12s0059g02500.t01 | Wine grape | nucleus | 20.17 | 16.13 |
| VIT_01s0011g04240.t01 | Wine grape | nucleus | 16.43 | 15.97 |
| VIT_19s0014g05120.t01 | Wine grape | nucleus | 14.41 | 13.33 |
Protein Annotations
| EntrezGene:100246796 | wikigene:100246796 | MapMan:15.5.1.2 | ProteinID:CCB46906 | ProteinID:CCB46906.1 | InterPro:CCT_domain |
| UniProt:F6H3L9 | EMBL:FN595231 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008270 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009909 |
| InterPro:IPR000315 | InterPro:IPR010402 | EMBL:KX986748 | EntrezGene:LOC100246796 | wikigene:LOC100246796 | PFAM:PF00643 |
| PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF14 | SMART:SM00336 |
| TIGR:TC59037 | UniParc:UPI0001983044 | ArrayExpress:VIT_04s0008g07340 | EnsemblPlantsGene:VIT_04s0008g07340 | EnsemblPlants:VIT_04s0008g07340.t01 | unigene:Vvi.4432 |
| RefSeq:XP_002263458 | RefSeq:XP_002263458.1 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
CONSTANS-like protein 4 [Source:UniProtKB/TrEMBL;Acc:F6H3L9]
Coordinates
chr4:-:7669706..7671321
Molecular Weight (calculated)
38003.2 Da
IEP (calculated)
6.254
GRAVY (calculated)
-0.486
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVEVESWRM ASKLCDSCKS APPTLFCRAD SAFLCVACDS KVHAANKLAS RHARVWMCEV CEQAPAHVTC KADAAALCVT CDRDIHSANP LARRHERVPV
101: VPFYDSAAAA AKSNAVNLLV DDRYYSDPDG DASREEAEAA SWLLPNPNPK LAESSDLNSS HYMFSDIDPY LDLDYPSMDP KLQSQQQQQS SGTDGVVPVQ
201: NKSVQAPLVN DNCFDMDFSG SKSFYNGQSL SQSVSSSSLE VGVVPDGNAM VDVTNPFGRS MNTGSESANQ TAQISSGIDR EARVLRYREK RKNRKFEKTI
301: RYASRKAYAE TRPRIKGRFA KRSEIEVDYS SSGALTADSG YGVVPSF
101: VPFYDSAAAA AKSNAVNLLV DDRYYSDPDG DASREEAEAA SWLLPNPNPK LAESSDLNSS HYMFSDIDPY LDLDYPSMDP KLQSQQQQQS SGTDGVVPVQ
201: NKSVQAPLVN DNCFDMDFSG SKSFYNGQSL SQSVSSSSLE VGVVPDGNAM VDVTNPFGRS MNTGSESANQ TAQISSGIDR EARVLRYREK RKNRKFEKTI
301: RYASRKAYAE TRPRIKGRFA KRSEIEVDYS SSGALTADSG YGVVPSF
001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
Arabidopsis Description
COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.