Factsheet for Solyc12g096500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075520	Potato	nucleus	91.9	92.16
Solyc08g006530.2.1	Tomato	nucleus	68.72	70.49
CDX88145	Canola	nucleus	48.04	58.5
CDY19821	Canola	nucleus	47.77	58.16
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	56.15	57.93
CDX87105	Canola	nucleus, plastid	47.77	53.94
CDX80476	Canola	nucleus, plastid	49.16	53.5
Bra009805.1-P	Field mustard	nucleus	51.68	52.71
Bra036528.1-P	Field mustard	nucleus	50.56	52.46
AT5G24930.1	Thale cress	nucleus	51.96	51.38
Solyc02g089500.2.1	Tomato	nucleus	18.16	45.77
Solyc07g006630.2.1	Tomato	nucleus	47.21	43.78
Solyc02g089540.2.1	Tomato	nucleus	45.53	41.69
Solyc02g089520.1.1	Tomato	nucleus	43.58	38.14
Solyc09g074560.2.1	Tomato	nucleus	20.95	20.11
Solyc07g045180.2.1	Tomato	nucleus	23.46	20.1
Solyc05g020020.2.1	Tomato	nucleus	22.91	20.0
Solyc05g046040.1.1	Tomato	nucleus	22.91	19.57
Solyc05g024010.2.1	Tomato	nucleus	22.35	17.7
Solyc12g006240.1.1	Tomato	nucleus	13.13	17.47
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	18.99	14.32

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0008270	GO:GO:0009416	GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909
InterPro:IPR000315	InterPro:IPR010402	UniProt:K4DHC3	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31319	PANTHER:PTHR31319:SF14	SMART:SM00336	EnsemblPlantsGene:Solyc12g096500.1	EnsemblPlants:Solyc12g096500.1.1
UniParc:UPI0002769D3F	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:+:65395355..65396522

Molecular Weight (calculated)

39506.8 Da

IEP (calculated)

5.726

GRAVY (calculated)

-0.503

Length

358 amino acids

Sequence
(BLAST)

001: MGTENWSLTA KLCDSCKTSP ATVFCRADSA FLCLGCDCKI HAANKLASRH ARVWVCEVCE QAPASVTCKA DAAALCVTCD RDIHSANPLA RRHERFPVVP
101: FYDFAVAKSH GGGDTDADAV DDEKYFDSTN ENPSQPEEEA EAASWILPTP KEGTDQYKSA DYLFNDMDSY LDIDLMSCEQ KPHILHHQQH QHNHYSSDGV
201: VPVQNNNETT HLPGPVVDGF PTYELDFTGS KPYMYNFTSQ SISQSVSSSS LDVGVVPDHS TMTDVSNTFV MNSSSGAIAG AGADVVPNAV SGLDREARVM
301: RYREKRKNRK FEKTIRYASR KAYAETRPRI KGRFAKRTET EIDSLITVDA SYGVVPSF

Best Arabidopsis Sequence Match ( AT5G24930.1 )
(BLAST)

001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF

Arabidopsis Description

COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.