Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19821 | Canola | nucleus | 88.96 | 95.92 |
| CDX88145 | Canola | nucleus | 83.28 | 89.8 |
| CDX80476 | Canola | nucleus, plastid | 89.27 | 86.02 |
| AT5G24930.1 | Thale cress | nucleus | 90.85 | 79.56 |
| CDY36171 | Canola | nucleus | 55.2 | 60.34 |
| CDY45597 | Canola | nucleus | 53.94 | 59.17 |
| VIT_04s0008g07340.t01 | Wine grape | nucleus, plastid | 64.04 | 58.5 |
| CDY02749 | Canola | nucleus, plastid | 42.27 | 51.74 |
| Solyc12g096500.1.1 | Tomato | nucleus | 53.94 | 47.77 |
| PGSC0003DMT400075520 | Potato | nucleus | 52.37 | 46.5 |
| PGSC0003DMT400067657 | Potato | nucleus | 50.47 | 46.11 |
| Solyc08g006530.2.1 | Tomato | nucleus | 50.47 | 45.85 |
| CDY69474 | Canola | nucleus, plastid | 13.88 | 45.83 |
| CDY58843 | Canola | nucleus, plastid | 47.95 | 44.44 |
| CDY25892 | Canola | nucleus | 44.16 | 42.04 |
| CDY49730 | Canola | nucleus | 27.44 | 39.91 |
| CDY71884 | Canola | nucleus | 36.91 | 39.66 |
| CDY71818 | Canola | nucleus | 35.96 | 38.51 |
| CDX85529 | Canola | nucleus | 38.17 | 38.17 |
| CDX90969 | Canola | nucleus | 37.54 | 37.07 |
| CDY26470 | Canola | nucleus | 38.17 | 36.34 |
| CDX69493 | Canola | nucleus | 38.49 | 36.2 |
| CDX74261 | Canola | nucleus | 25.87 | 35.96 |
| CDY26469 | Canola | nucleus | 40.06 | 34.7 |
| CDX69494 | Canola | nucleus | 40.06 | 34.51 |
| TraesCS6D01G269500.1 | Wheat | nucleus | 39.12 | 33.6 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 38.8 | 33.24 |
| TraesCS6A01G289400.1 | Wheat | nucleus | 38.49 | 33.06 |
| CDX91989 | Canola | nucleus | 23.66 | 32.89 |
| Zm00001d045735_P002 | Maize | extracellular, vacuole | 42.27 | 31.31 |
| Os06t0275000-01 | Rice | mitochondrion | 38.8 | 31.14 |
| EER88227 | Sorghum | nucleus | 40.06 | 30.9 |
| TraesCS7D01G213000.2 | Wheat | nucleus | 35.96 | 29.77 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 35.96 | 29.77 |
| TraesCS7A01G211300.1 | Wheat | nucleus | 35.65 | 29.35 |
| OQU85473 | Sorghum | nucleus | 33.75 | 29.23 |
| CDY15696 | Canola | nucleus | 20.5 | 22.49 |
| CDY53026 | Canola | nucleus | 22.71 | 21.56 |
| CDX80141 | Canola | nucleus | 22.4 | 21.39 |
| CDY07979 | Canola | nucleus | 23.34 | 21.02 |
| CDY35952 | Canola | nucleus | 24.29 | 20.87 |
| CDY05691 | Canola | nucleus | 22.71 | 20.75 |
| CDY28029 | Canola | nucleus | 24.29 | 20.7 |
| CDY48743 | Canola | nucleus | 22.71 | 20.57 |
| CDY68819 | Canola | nucleus | 24.61 | 20.16 |
| CDY30385 | Canola | nucleus | 24.61 | 20.16 |
| CDY11755 | Canola | nucleus | 24.92 | 20.1 |
| CDY22125 | Canola | nucleus | 23.03 | 19.95 |
| CDX85321 | Canola | nucleus | 21.77 | 19.22 |
| CDX86318 | Canola | nucleus | 21.45 | 18.99 |
| CDY66639 | Canola | nucleus | 23.97 | 18.86 |
| CDX74034 | Canola | nucleus | 23.03 | 18.72 |
| CDY64255 | Canola | nucleus | 21.77 | 18.6 |
| CDX90119 | Canola | nucleus | 24.29 | 18.38 |
| CDY55657 | Canola | nucleus | 22.08 | 18.13 |
| CDY04213 | Canola | nucleus | 18.61 | 17.56 |
| CDY48428 | Canola | nucleus | 11.04 | 12.96 |
| CDY07393 | Canola | nucleus | 19.24 | 11.38 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078DD32 | InterPro:CCT_domain | EnsemblPlants:CDX87105 | ProteinID:CDX87105 | ProteinID:CDX87105.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00146006001 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF00643 | PFAM:PF06203 |
| PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31319 | PANTHER:PTHR31319:SF14 | SMART:SM00336 | UniParc:UPI0004EF4500 |
| InterPro:Znf_B-box | SEG:seg | : | : | : | : |
Description
BnaC09g04200D
Coordinates
chrLK031849:-:492190..493989
Molecular Weight (calculated)
34295.2 Da
IEP (calculated)
7.602
GRAVY (calculated)
-0.405
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSG
101: ADGSGKNTAA NFLNDCYFTD LDGNEAASWL LPNPKTTAPA VPGDSPEMNT GQGFMFPDLD LDYGTVDPKL EVGVPTVNEN CYELDFTGSK GFTTYGHNCI
201: SHSVSSSSLE VGVVPDGGSV ADVWYPYGGP ATSGTDPGTQ RAVPLTSAER EARVMRYREK RKNRKFEKTI RYASRKAYAE MRPRIKGRFA KRTDTSKSND
301: VVGHGGMFSG FGLVPTF
101: ADGSGKNTAA NFLNDCYFTD LDGNEAASWL LPNPKTTAPA VPGDSPEMNT GQGFMFPDLD LDYGTVDPKL EVGVPTVNEN CYELDFTGSK GFTTYGHNCI
201: SHSVSSSSLE VGVVPDGGSV ADVWYPYGGP ATSGTDPGTQ RAVPLTSAER EARVMRYREK RKNRKFEKTI RYASRKAYAE MRPRIKGRFA KRTDTSKSND
301: VVGHGGMFSG FGLVPTF
001: MASKLCDSCK SATAALYCRP DAAFLCLSCD SKVHAANKLA SRHARVWMCE VCEQAPAHVT CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFYDSVSS
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
101: DGSVKHTAVN FLDDCYFSDI DGNGSREEEE EEAASWLLLP NPKTTTTATA GIVAVTSAEE VPGDSPEMNT GQQYLFSDPD PYLDLDYGNV DPKVESLEQN
201: SSGTDGVVPV ENRTVRIPTV NENCFEMDFT GGSKGFTYGG GYNCISHSVS SSSMEVGVVP DGGSVADVSY PYGGPATSGA DPGTQRAVPL TSAEREARVM
301: RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDT NESNDVVGHG GIFSGFGLVP TF
Arabidopsis Description
COL4Zinc finger protein CONSTANS-LIKE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q940T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.