CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04213	Canola	nucleus	59.14	94.35
AT1G68190.2	Thale cress	extracellular, golgi, vacuole	47.57	66.23
VIT_01s0011g04240.t01	Wine grape	nucleus	25.93	38.94
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	27.8	30.47
KRH35868	Soybean	nucleus	24.63	30.14
KRG90917	Soybean	nucleus	24.44	29.91
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.49	29.89
CDY07979	Canola	nucleus	18.1	27.56
CDY35952	Canola	nucleus	18.47	26.83
CDY05691	Canola	nucleus	17.35	26.8
CDY22125	Canola	nucleus	18.1	26.5
CDY48743	Canola	nucleus	17.16	26.29
CDY28029	Canola	nucleus	18.1	26.08
CDX85321	Canola	nucleus	16.79	25.07
CDX86318	Canola	nucleus	16.6	24.86
CDY15696	Canola	nucleus	13.25	24.57
CDX74034	Canola	nucleus	17.72	24.36
CDY19821	Canola	nucleus	11.57	21.09
CDY64255	Canola	nucleus	14.55	21.02
CDY55657	Canola	nucleus	15.11	20.98
CDX88145	Canola	nucleus	11.38	20.75
CDY11755	Canola	nucleus	14.93	20.36
CDY66639	Canola	nucleus	15.11	20.1
CDY45597	Canola	nucleus	10.82	20.07
CDY36171	Canola	nucleus	10.63	19.66
CDX80141	Canola	nucleus	11.94	19.28
CDX87105	Canola	nucleus, plastid	11.38	19.24
CDY53026	Canola	nucleus	11.94	19.16
CDY30385	Canola	nucleus	13.81	19.12
CDY68819	Canola	nucleus	13.81	19.12
CDX80476	Canola	nucleus, plastid	11.38	18.54
CDX90119	Canola	nucleus	14.37	18.38
CDY02749	Canola	nucleus, plastid	8.77	18.15
CDY71884	Canola	nucleus	9.89	17.97
CDX85529	Canola	nucleus	10.45	17.67
CDY26470	Canola	nucleus	10.82	17.42
CDY71818	Canola	nucleus	9.51	17.23
CDX69493	Canola	nucleus	10.82	17.21
CDX90969	Canola	nucleus	10.26	17.13
CDY58843	Canola	nucleus, plastid	10.26	16.08
CDY25892	Canola	nucleus	9.7	15.62
CDX69494	Canola	nucleus	10.45	15.22
CDY26469	Canola	nucleus	10.26	15.03
CDY69474	Canola	nucleus, plastid	2.61	14.58
CDX74261	Canola	nucleus	4.48	10.53
CDX91989	Canola	nucleus	4.1	9.65
CDY49730	Canola	nucleus	3.92	9.63
CDY48428	Canola	nucleus	4.85	9.63

Protein Annotations

MapMan:15.5.1.2	MapMan:15.5.16	Gene3D:4.10.1000.10	GO:A0A078F6X1	UniProt:A0A078F6X1	EnsemblPlants:CDY07393
ProteinID:CDY07393	ProteinID:CDY07393.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00124377001	InterPro:IPR000315
InterPro:IPR000571	PFAM:PF00642	PFscan:PS50103	PFscan:PS50119	PANTHER:PTHR31717	PANTHER:PTHR31717:SF40
SMART:SM00336	SMART:SM00356	SUPFAM:SSF90229	UniParc:UPI0004EE69E4	InterPro:Znf_B-box	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

BnaA07g24720DBnaA07g24720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6X1]

Coordinates

chrLK031978:-:421352..424692

Molecular Weight (calculated)

60286.9 Da

IEP (calculated)

6.292

GRAVY (calculated)

-0.612

Length

536 amino acids

Sequence
(BLAST)

001: MERLCEVCKA YRAVVYCIAD AASLCLTCDA KVHSANALSG RHLRTLLCGF CKNQPCVVRC LDHKMFLCTG CNDKIHGVVS SKHVRHDVRC YTGCPSAKDF
101: AVMWGFRVMD NDVSLEKSFA MAKPKVQREA GFVLEQILEL EKLQLREENK VLSLTEHADP SPLELPKQSE ERLVDLRQTG KELIVDFSHL SSSSTLGDSF
201: WECKSPFSKS YQLWHQNLQD IGVCEDTVCD DDDFHIPDID LTFQNFEELF GADPDPTTDN YKLREMNTFS SPSSKPASSS LSFSRSNGGG SSKTHCSHNH
301: SDEVISICSP LSNNARQKAI SRLKEKKRAR TEEKQKQKMN TERVSYLFIT MLLFWNNENQ SPAADENRAD DVSNQDLNRS SLPKSISVRS SGYSKASQGG
401: GVVSQSRGAI PKPGACAQQL TTTQKVYVRG GKKEEEEEEE EEEEEEEIEV EVYNQGMTKT ELCNKWQETG TCPYADHCQF AHGIKELRPV IRHPRYKTEV
501: CRMVLAGDVC SYGHRCHFRH SLSDQEKLTA AGDVCP

Best Arabidopsis Sequence Match ( AT1G68190.3 )
(BLAST)

001: MLCIIIIENM ERVCEFCKAY RAVVYCIADT ANLCLTCDAK VHSANSLSGR HLRTVLCDSC KNQPCVVRCF DHKMFLCHGC NDKFHGGGSS EHRRRDLRCY
101: TGCPPAKDFA VMWGFRVMDD DDDVSLEQSF RMVKPKVQRE GGFILEQILE LEKVQLREEN GSSSLTERGD PSPLELPKKP EEQLIDLPQT GKELVVDFSH
201: LSSSSTLGDS FWECKSPYNK NNQLWHQNIQ DIGVCEDTIC SDDDFQIPDI DLTFRNFEEQ FGADPEPIAD SNNVFFVSSL DKSHEMKTFS SSFNNPIFAP
301: KPASSTISFS SSETDNPYSH SEEVISFCPS LSNNTRQKVI TRLKEKKRAR VEEKKA

Arabidopsis Description

B-box zinc finger family protein [Source:TAIR;Acc:AT1G68190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.