Factsheet for Solyc04g007470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	96.0	93.25
VIT_01s0011g04240.t01	Wine grape	nucleus	37.47	49.86
CDY04213	Canola	nucleus	28.42	40.18
KRH35868	Soybean	nucleus	34.53	37.44
KRG90917	Soybean	nucleus	34.32	37.21
AT1G68190.2	Thale cress	extracellular, golgi, vacuole	27.58	34.03
Solyc12g006240.1.1	Tomato	nucleus	16.0	28.25
Solyc05g020020.2.1	Tomato	nucleus	22.95	26.59
CDY07393	Canola	nucleus	29.89	26.49
Solyc02g089500.2.1	Tomato	nucleus	7.79	26.06
Solyc07g045180.2.1	Tomato	nucleus	21.89	24.88
Solyc05g046040.1.1	Tomato	nucleus	18.11	20.53
Solyc05g024010.2.1	Tomato	nucleus	18.95	19.91
Solyc09g074560.2.1	Tomato	nucleus	15.16	19.3
Solyc12g096500.1.1	Tomato	nucleus	14.32	18.99
Solyc08g006530.2.1	Tomato	nucleus	13.68	18.62
Solyc02g089540.2.1	Tomato	nucleus	13.89	16.88
Solyc02g089520.1.1	Tomato	nucleus	14.11	16.38
Solyc07g006630.2.1	Tomato	nucleus	12.0	14.77

Protein Annotations

EnsemblPlants:Solyc04g007470.2.1	EnsemblPlantsGene:Solyc04g007470.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31717	PANTHER:PTHR31717:SF40
PFscan:PS50119	SEG:seg	SMART:SM00336	UniParc:UPI00027669BC	UniProt:K4BNQ4	MapMan:15.5.1.2

Description

No Description!

Coordinates

chr4:+:1146534..1149345

Molecular Weight (calculated)

53136.7 Da

IEP (calculated)

5.941

GRAVY (calculated)

-0.661

Length

475 amino acids

Sequence
(BLAST)

001: MEMEKACEFC MLLKPVVYCE ADAAHLCLSC DAKVHSANAL SNRHPRTLVC ECCGHNPAYI RCSDHQTFMC RDCDRCHHDL SSQHQRKVIT SYMGSPSAKD
101: LAALWGFGLK DLENATPPDQ FISTSNGKAN GVKVISKKFK RSHSSPGGSS LASELDFTGL VVSPESEVGS TSYYTKVLSL RKRRENTSLI LQQILDLERL
201: QLTEGSNNLT SGESRNNVSS LKNCTSWNMH NKFDCLQSSL DLGPELQDWG STHESPVDES FPLPLPDGDS FWECKSPVQS SQLWPQNLQD LGAYAELERF
301: DNSNMPDVDL TFQNFEELFG EDQYLNNTLL EEDMTCSSME NDSSIDRSDY SYVKKDISTA SSVRTGHSTH FGQAHGEHIP TIKDCPPPIR TNFSSLSFSA
401: SRLSSESSGN EYVDSPAAND QEVSCNSQMD SKKKARLYEK QARNTPRRAR TNFKKQHVLK AHCYETDALN MSRSF

Best Arabidopsis Sequence Match ( AT1G68190.3 )
(BLAST)

001: MLCIIIIENM ERVCEFCKAY RAVVYCIADT ANLCLTCDAK VHSANSLSGR HLRTVLCDSC KNQPCVVRCF DHKMFLCHGC NDKFHGGGSS EHRRRDLRCY
101: TGCPPAKDFA VMWGFRVMDD DDDVSLEQSF RMVKPKVQRE GGFILEQILE LEKVQLREEN GSSSLTERGD PSPLELPKKP EEQLIDLPQT GKELVVDFSH
201: LSSSSTLGDS FWECKSPYNK NNQLWHQNIQ DIGVCEDTIC SDDDFQIPDI DLTFRNFEEQ FGADPEPIAD SNNVFFVSSL DKSHEMKTFS SSFNNPIFAP
301: KPASSTISFS SSETDNPYSH SEEVISFCPS LSNNTRQKVI TRLKEKKRAR VEEKKA

Arabidopsis Description

B-box zinc finger family protein [Source:TAIR;Acc:AT1G68190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.