CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90917	Soybean	nucleus	92.47	92.47
VIT_01s0011g04240.t01	Wine grape	nucleus	42.01	51.54
CDY04213	Canola	nucleus	29.68	38.69
AT1G68190.2	Thale cress	extracellular, golgi, vacuole	31.51	35.84
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	37.44	34.53
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	37.9	33.95
CDY07393	Canola	nucleus	30.14	24.63
KRH16989	Soybean	nucleus	21.46	22.87
KRG89998	Soybean	nucleus	21.23	22.74
KRH72628	Soybean	nucleus	21.0	22.72
KRH17709	Soybean	nucleus	21.0	22.49
KRH26833	Soybean	nucleus	20.32	21.04
KRH22524	Soybean	nucleus	20.09	20.8
KRH68113	Soybean	nucleus	13.93	17.48
KRG96381	Soybean	nucleus	13.93	17.38
KRH18308	Soybean	nucleus	14.16	17.17
KRH71535	Soybean	nucleus	13.24	17.06
KRH31920	Soybean	nucleus	13.47	16.95
KRG93763	Soybean	nucleus	13.47	16.12
KRG94656	Soybean	nucleus	14.16	16.1
KRH06865	Soybean	nucleus	13.47	15.49
KRH61628	Soybean	nucleus, plastid	10.5	14.89
KRH52295	Soybean	nucleus, plastid	10.5	14.84
KRH18980	Soybean	nucleus	12.1	14.52
KRH02915	Soybean	nucleus	11.87	13.9
KRH45169	Soybean	nucleus	10.73	13.51
KRH01455	Soybean	nucleus	10.73	13.35

Protein Annotations

EMBL:ACUP02006703	EnsemblPlants:KRH35868	EnsemblPlantsGene:GLYMA_10G269400	EntrezGene:100819787	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box
PANTHER:PTHR31717	PANTHER:PTHR31717:SF40	PFscan:PS50119	ProteinID:KRH35868	ProteinID:KRH35868.1	ProteinID:KRH35869.1
SEG:seg	SMART:SM00336	UniParc:UPI000233CF30	UniProt:K7LLP6	MapMan:15.5.1.2	:

Description

hypothetical protein

Coordinates

chr10:-:49177609..49186778

Molecular Weight (calculated)

48755.1 Da

IEP (calculated)

4.415

GRAVY (calculated)

-0.419

Length

438 amino acids

Sequence
(BLAST)

001: MEKVCEFCTA LRPLVYCKAD AAYLCLSCDA KVHLANAVSG RHLRNLVCNS CGYHLAYVLC LEHKMLICRD CDQKLHNISL PHKKRAIRSF MGCPSAKDFA
101: ALWGVELNEI ENSASQDQFD SVSCVSADLN VAQVSGKPGI QTEVPSMLSG AKLDGGGSTS QQGQILYSDQ KRQTILQQII DFKWLQQNEE IDYSAKINRL
201: QEKDSSPSVY QTLKKLDDKF NEQAQNSQDL ATNVLEKDCP IMELNPETLP STFSQLDNLY SSSTIDLPLH GELFWTCKSP LQSNQLWSQN IQDLGICKEL
301: VCQDDFNIPD VDLTFQNYEE LFGGDQDPIR ILLDDQDVSC SSLEKDKSVD KSVIDNPSAM EESSAAASIT ISQSDLDNKD MNPLSQYCPR SMDPAHAIRP
401: FDSTIPFSVL RFNEESSCTN HDDSALSPYS EGRAYSGS

Best Arabidopsis Sequence Match ( AT1G68190.3 )
(BLAST)

001: MLCIIIIENM ERVCEFCKAY RAVVYCIADT ANLCLTCDAK VHSANSLSGR HLRTVLCDSC KNQPCVVRCF DHKMFLCHGC NDKFHGGGSS EHRRRDLRCY
101: TGCPPAKDFA VMWGFRVMDD DDDVSLEQSF RMVKPKVQRE GGFILEQILE LEKVQLREEN GSSSLTERGD PSPLELPKKP EEQLIDLPQT GKELVVDFSH
201: LSSSSTLGDS FWECKSPYNK NNQLWHQNIQ DIGVCEDTIC SDDDFQIPDI DLTFRNFEEQ FGADPEPIAD SNNVFFVSSL DKSHEMKTFS SSFNNPIFAP
301: KPASSTISFS SSETDNPYSH SEEVISFCPS LSNNTRQKVI TRLKEKKRAR VEEKKA

Arabidopsis Description

B-box zinc finger family protein [Source:TAIR;Acc:AT1G68190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.