Factsheet for VIT_01s0011g04240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35868	Soybean	nucleus	51.54	42.01
KRG90917	Soybean	nucleus	49.86	40.64
CDY04213	Canola	nucleus	37.82	40.18
Solyc04g007470.2.1	Tomato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	49.86	37.47
PGSC0003DMT400015373	Potato	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	50.14	36.61
AT1G68190.2	Thale cress	extracellular, golgi, vacuole	37.53	34.81
CDY07393	Canola	nucleus	38.94	25.93
VIT_12s0057g01350.t01	Wine grape	nucleus	24.37	20.96
VIT_00s0194g00070.t01	Wine grape	nucleus	23.81	20.53
VIT_12s0059g02500.t01	Wine grape	nucleus	22.13	18.2
VIT_19s0014g05120.t01	Wine grape	nucleus	18.21	17.33
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	15.97	16.43
VIT_07s0104g01360.t01	Wine grape	nucleus	17.93	16.24
VIT_01s0146g00360.t01	Wine grape	nucleus	21.01	15.99
VIT_14s0068g01380.t01	Wine grape	nucleus	19.05	15.14
VIT_11s0052g01800.t01	Wine grape	nucleus, plastid	14.01	13.85
VIT_14s0083g00640.t01	Wine grape	nucleus	13.73	12.53

Protein Annotations

EntrezGene:100256160	wikigene:100256160	MapMan:15.5.1.2	ProteinID:CBI26959	ProteinID:CBI26959.3	UniProt:D7T8Y8
EMBL:FN595752	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008270	InterPro:IPR000315	EntrezGene:LOC100256160	wikigene:LOC100256160	PFscan:PS50119	PANTHER:PTHR31717
PANTHER:PTHR31717:SF40	SMART:SM00336	TIGR:TC61110	UniParc:UPI0001BE29E7	ArrayExpress:VIT_01s0011g04240	EnsemblPlantsGene:VIT_01s0011g04240
EnsemblPlants:VIT_01s0011g04240.t01	RefSeq:XP_002279997	RefSeq:XP_002279997.2	RefSeq:XP_010663067.1	RefSeq:XP_010663110.1	RefSeq:XP_019074597.1
RefSeq:XP_019074600.1	InterPro:Znf_B-box	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:3849170..3854088

Molecular Weight (calculated)

39948.7 Da

IEP (calculated)

4.756

GRAVY (calculated)

-0.447

Length

357 amino acids

Sequence
(BLAST)

001: MEKICEFCTS LRPVVYCKAD AALLCLSCDA KVHSANALSN RHPRTLLCES CKCRPTSLRC LDHRVFLCRN CDRSLHEVSS QHHRRAIRSY VGCPSAKDFV
101: ALWGFELNEM ETVAPRDQFV STSCGPLEQG VRNSSFSRHS CQQDGVSSLA FELNSSISIF GAESEVGSST QQSKAFYNGQ GQQKTSVILQ QILDLKRLQL
201: TDRKNTSSLI RGQEQIDISS SKFSTSQRLD DDLDEHSQNS LGICSDLQQM DSPKQELKVE PFPSPFSQLE QLSSSSTVGI PLHGDPFWQC KSPIQSSQLW
301: SQNMQDLGVC EDVNCFDDFN IPDVDLTFQN FEELFGGDQD PTRLPVDIED VTYSSLE

Best Arabidopsis Sequence Match ( AT1G68190.3 )
(BLAST)

001: MLCIIIIENM ERVCEFCKAY RAVVYCIADT ANLCLTCDAK VHSANSLSGR HLRTVLCDSC KNQPCVVRCF DHKMFLCHGC NDKFHGGGSS EHRRRDLRCY
101: TGCPPAKDFA VMWGFRVMDD DDDVSLEQSF RMVKPKVQRE GGFILEQILE LEKVQLREEN GSSSLTERGD PSPLELPKKP EEQLIDLPQT GKELVVDFSH
201: LSSSSTLGDS FWECKSPYNK NNQLWHQNIQ DIGVCEDTIC SDDDFQIPDI DLTFRNFEEQ FGADPEPIAD SNNVFFVSSL DKSHEMKTFS SSFNNPIFAP
301: KPASSTISFS SSETDNPYSH SEEVISFCPS LSNNTRQKVI TRLKEKKRAR VEEKKA

Arabidopsis Description

B-box zinc finger family protein [Source:TAIR;Acc:AT1G68190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.