Factsheet for VIT_14s0068g01380.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_09s0054g00530.t01
VIT_17s0000g01130.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	VIT_09s0054g00530.t01	AT3G21150.1	21798944
AT1G28050.1	VIT_17s0000g01130.t01	AT3G48590.1	17138697
AT2G33500.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0146g00360.t01	Wine grape	nucleus	51.45	49.25
CDY15696	Canola	nucleus	29.84	46.37
Bra030070.1-P	Field mustard	nucleus	30.96	45.13
AT2G33500.1	Thale cress	nucleus	40.31	45.02
Solyc05g024010.2.1	Tomato	nucleus	44.77	44.47
PGSC0003DMT400065377	Potato	nucleus	44.77	44.37
KRH06865	Soybean	nucleus	37.42	44.09
CDY30385	Canola	nucleus	37.42	43.41
KRG94656	Soybean	nucleus	37.19	43.38
CDY68819	Canola	nucleus	37.19	43.15
CDY11755	Canola	nucleus	37.64	43.0
AT1G28050.1	Thale cress	nucleus	40.53	42.03
Bra010908.1-P	Field mustard	nucleus	38.98	41.87
CDY66639	Canola	nucleus	37.19	41.44
Bra041077.1-P	Field mustard	nucleus	37.64	41.42
CDX90119	Canola	nucleus	38.53	41.29
CDY48428	Canola	nucleus	20.27	33.7
GSMUA_Achr10P...	Banana	nucleus	34.08	33.41
EES14176	Sorghum	nucleus	34.97	32.04
GSMUA_Achr6P06130_001	Banana	nucleus	31.18	31.46
TraesCS7B01G161500.1	Wheat	nucleus	34.08	31.35
TraesCS7D01G264300.1	Wheat	nucleus	34.08	31.29
Zm00001d031662_P001	Maize	nucleus	33.63	30.88
TraesCS7A01G263500.1	Wheat	nucleus	33.63	30.82
VIT_07s0104g01360.t01	Wine grape	nucleus	26.5	30.2
Os09t0509700-01	Rice	nucleus	28.73	29.93
GSMUA_Achr11P...	Banana	nucleus	34.3	29.73
HORVU0Hr1G021050.5	Barley	cytosol	24.94	26.48
VIT_00s0194g00070.t01	Wine grape	nucleus	22.27	24.15
VIT_12s0057g01350.t01	Wine grape	nucleus	21.83	23.61
VIT_04s0008g07340.t01	Wine grape	nucleus, plastid	18.04	23.34
VIT_12s0059g02500.t01	Wine grape	nucleus	22.49	23.27
VIT_11s0052g01800.t01	Wine grape	nucleus, plastid	18.71	23.27
VIT_14s0083g00640.t01	Wine grape	nucleus	19.6	22.51
VIT_19s0014g05120.t01	Wine grape	nucleus	17.15	20.53
VIT_01s0011g04240.t01	Wine grape	nucleus	15.14	19.05

Protein Annotations

EntrezGene:100242976	MapMan:15.5.1.2	EMBL:AM487000	ProteinID:CAN77743	ProteinID:CAN77743.1	ProteinID:CCB46991
ProteinID:CCB46991.1	InterPro:CCT_domain	UniProt:F6H447	EMBL:FN595232	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
InterPro:IPR000315	InterPro:IPR010402	EMBL:KX986755	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31717	PANTHER:PTHR31717:SF20	SMART:SM00336	UniParc:UPI0002107E8B	ArrayExpress:VIT_14s0068g01380
EnsemblPlantsGene:VIT_14s0068g01380	EnsemblPlants:VIT_14s0068g01380.t01	RefSeq:XP_010660698.1	InterPro:Znf_B-box	SEG:seg	:

Description

CONSTANS-like protein 14a [Source:UniProtKB/TrEMBL;Acc:F6H447]

Coordinates

chr14:+:25084927..25088384

Molecular Weight (calculated)

49443.6 Da

IEP (calculated)

6.099

GRAVY (calculated)

-0.607

Length

449 amino acids

Sequence
(BLAST)

001: METTSKSRPS AAVPCDFCDS KTAVVHCRAD SAKLCLLCDR HVHSANALSR KHLRSQICDN CRTEPVSFRC FTDNLALCQS CDWDSHGNCS VPSLHERTPV
101: ESFSGCPSPL ELASVFRVDL KDGNWSSWNF GSVNVQDFVV PGENCYAGCG TKVEKNGISV VYEQLVDLIR SDVDVVRGDV DGDGDEGEDG AELGPGTPGR
201: CANMGNFQGV DLDNGDDEEL LRQQTPFTSL LMLPTPVDAR DTGCGYGCAV EGDAMWDRGH LSYQAPQIWD FHLGRSRICK ETSPEAGYDV DNSGFVIKNY
301: SEITKGSSLT RTKALQGMYE MNCTTTHEDI LSKNSHSNKA LSSQGPTTAE SNNIPIVGPS SESWTAEPNT NSIKSMQFKD LLIGSGTART ETTNVDMELL
401: AQNRGHAMLR YKEKKKTRRY EKHIRYESRK ARADTRKRVK GRFVKASDS

Best Arabidopsis Sequence Match ( AT2G33500.1 )
(BLAST)

001: MGTSTTESVV ACEFCGERTA VLFCRADTAK LCLPCDQHVH SANLLSRKHV RSQICDNCSK EPVSVRCFTD NLVLCQECDW DVHGSCSSSA THERSAVEGF
101: SGCPSVLELA AVWGIDLKGK KKEDDEDELT KNFGMGLDSW GSGSNIVQEL IVPYDVSCKK QSFSFGRSKQ VVFEQLELLK RGFVEGEGEI MVPEGINGGG
201: SISQPSPTTS FTSLLMSQSL CGNGMQWNAT NHSTGQNTQI WDFNLGQSRN PDEPSPVETK GSTFTFNNVT HLKNDTRTTN MNAFKESYQQ EDSVHSTSTK
301: GQETSKSNNI PAAIHSHKSS NDSCGLHCTE HIAITSNRAT RLVAVTNADL EQMAQNRDNA MQRYKEKKKT RRYDKTIRYE TRKARAETRL RVKGRFVKAT
401: DP

Arabidopsis Description

COL14Zinc finger protein CONSTANS-LIKE 14 [Source:UniProtKB/Swiss-Prot;Acc:O22800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.