Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G264300.1 | Wheat | nucleus | 97.95 | 97.75 |
| TraesCS7A01G263500.1 | Wheat | nucleus | 97.34 | 96.94 |
| HORVU0Hr1G021050.5 | Barley | cytosol | 73.98 | 85.34 |
| Os08t0536300-01 | Rice | nucleus | 74.8 | 74.8 |
| EES14176 | Sorghum | nucleus | 72.13 | 71.84 |
| Zm00001d031662_P001 | Maize | nucleus | 71.11 | 70.96 |
| GSMUA_Achr6P06130_001 | Banana | nucleus | 42.21 | 46.29 |
| CDY15696 | Canola | nucleus | 24.59 | 41.52 |
| Bra030070.1-P | Field mustard | nucleus | 24.59 | 38.96 |
| CDY30385 | Canola | nucleus | 28.89 | 36.43 |
| CDY68819 | Canola | nucleus | 28.89 | 36.43 |
| CDY11755 | Canola | nucleus | 29.1 | 36.13 |
| CDY66639 | Canola | nucleus | 29.1 | 35.24 |
| Bra041077.1-P | Field mustard | nucleus | 29.3 | 35.05 |
| VIT_14s0068g01380.t01 | Wine grape | nucleus | 31.35 | 34.08 |
| VIT_01s0146g00360.t01 | Wine grape | nucleus | 32.38 | 33.69 |
| Bra010908.1-P | Field mustard | nucleus | 28.28 | 33.01 |
| PGSC0003DMT400065377 | Potato | nucleus | 30.53 | 32.89 |
| Solyc05g024010.2.1 | Tomato | nucleus | 30.33 | 32.74 |
| KRH06865 | Soybean | nucleus | 25.2 | 32.28 |
| CDX90119 | Canola | nucleus | 27.66 | 32.22 |
| KRG94656 | Soybean | nucleus | 25.2 | 31.95 |
| CDY48428 | Canola | nucleus | 17.62 | 31.85 |
| AT2G33500.1 | Thale cress | nucleus | 26.23 | 31.84 |
| AT1G28050.1 | Thale cress | nucleus | 27.66 | 31.18 |
| TraesCS2B01G140300.1 | Wheat | nucleus | 22.75 | 28.68 |
| TraesCS4B01G155800.1 | Wheat | nucleus | 21.52 | 26.45 |
| TraesCS6B01G315400.1 | Wheat | nucleus | 20.29 | 25.38 |
| TraesCS2B01G372000.1 | Wheat | nucleus | 16.39 | 25.08 |
| TraesCS6B01G248400.1 | Wheat | nucleus | 15.37 | 23.36 |
| TraesCS7B01G400600.1 | Wheat | nucleus | 15.78 | 20.7 |
| TraesCS6B01G319500.1 | Wheat | nucleus | 15.57 | 20.54 |
| TraesCS7B01G032800.1 | Wheat | nucleus | 10.04 | 20.16 |
| TraesCS7B01G125500.1 | Wheat | cytosol, nucleus, plastid | 13.52 | 19.58 |
| TraesCS7B01G118300.1 | Wheat | nucleus | 15.37 | 19.58 |
| TraesCS6B01G179000.2 | Wheat | mitochondrion | 14.75 | 19.2 |
| TraesCS5B01G163500.1 | Wheat | nucleus | 12.7 | 19.08 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G161500.1 | EnsemblPlantsGene:TraesCS7B01G161500 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31717 | PANTHER:PTHR31717:SF20 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 |
| SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:15.5.1.2 | : | : |
Description
No Description!
Coordinates
chr7B:-:220866680..220870311
Molecular Weight (calculated)
51813.6 Da
IEP (calculated)
6.857
GRAVY (calculated)
-0.537
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDNGGARQP WPCDYCGEAA AALHCRADAA RLCVACDRHV HAANALSRKH VRAPLCAGCA ARPAAARVAA GGGEPAFLCA DCDGGCEGAA RVPVEGFAGC
101: PAASELAASW GVDLLPGAGG AAAFGCGLGG GGDQEDEDAF FFSSLDYSML VDPEMRDLYV PCNPPEVAVS AGGGRPLKGE ALCHQLAEMA RRETETSQPQ
201: GYSDLSPRTP RRSSAGASGR LPDKQAPPPL PPAPEVPCPY TSLLMMPSAH CAELIGNDRL RDDDEEQLRW EFAPPSSVPP TQIWDFNLGR SRNHNEKSAH
301: EIGFGSNNGG FMIKSYSDML KEISCGTTKD LEDIYDSGYG AAAEDIMSTN ICQVPSKNVS TASNKRMKVS SCTSTMDGPT TSGSHVPASG TLGSSSHDRG
401: AAPTREISFG DQRIVPTGAE KPAARIDSET LALNRDSAMQ RYKEKRKNRR YEKHIRYESR KLRADTRKRV KGRFVKSNEA LSAGSNGG
101: PAASELAASW GVDLLPGAGG AAAFGCGLGG GGDQEDEDAF FFSSLDYSML VDPEMRDLYV PCNPPEVAVS AGGGRPLKGE ALCHQLAEMA RRETETSQPQ
201: GYSDLSPRTP RRSSAGASGR LPDKQAPPPL PPAPEVPCPY TSLLMMPSAH CAELIGNDRL RDDDEEQLRW EFAPPSSVPP TQIWDFNLGR SRNHNEKSAH
301: EIGFGSNNGG FMIKSYSDML KEISCGTTKD LEDIYDSGYG AAAEDIMSTN ICQVPSKNVS TASNKRMKVS SCTSTMDGPT TSGSHVPASG TLGSSSHDRG
401: AAPTREISFG DQRIVPTGAE KPAARIDSET LALNRDSAMQ RYKEKRKNRR YEKHIRYESR KLRADTRKRV KGRFVKSNEA LSAGSNGG
001: MGTSTTESVV ACEFCGERTA VLFCRADTAK LCLPCDQHVH SANLLSRKHV RSQICDNCSK EPVSVRCFTD NLVLCQECDW DVHGSCSSSA THERSAVEGF
101: SGCPSVLELA AVWGIDLKGK KKEDDEDELT KNFGMGLDSW GSGSNIVQEL IVPYDVSCKK QSFSFGRSKQ VVFEQLELLK RGFVEGEGEI MVPEGINGGG
201: SISQPSPTTS FTSLLMSQSL CGNGMQWNAT NHSTGQNTQI WDFNLGQSRN PDEPSPVETK GSTFTFNNVT HLKNDTRTTN MNAFKESYQQ EDSVHSTSTK
301: GQETSKSNNI PAAIHSHKSS NDSCGLHCTE HIAITSNRAT RLVAVTNADL EQMAQNRDNA MQRYKEKKKT RRYDKTIRYE TRKARAETRL RVKGRFVKAT
401: DP
101: SGCPSVLELA AVWGIDLKGK KKEDDEDELT KNFGMGLDSW GSGSNIVQEL IVPYDVSCKK QSFSFGRSKQ VVFEQLELLK RGFVEGEGEI MVPEGINGGG
201: SISQPSPTTS FTSLLMSQSL CGNGMQWNAT NHSTGQNTQI WDFNLGQSRN PDEPSPVETK GSTFTFNNVT HLKNDTRTTN MNAFKESYQQ EDSVHSTSTK
301: GQETSKSNNI PAAIHSHKSS NDSCGLHCTE HIAITSNRAT RLVAVTNADL EQMAQNRDNA MQRYKEKKKT RRYDKTIRYE TRKARAETRL RVKGRFVKAT
401: DP
Arabidopsis Description
COL14Zinc finger protein CONSTANS-LIKE 14 [Source:UniProtKB/Swiss-Prot;Acc:O22800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.