CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH44613
KRH47291
KRH52586
KRH54177
KRH61926
KRH63772

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28050.1	KRH44613	AT3G21150.1	21798944
AT1G28050.1	KRH47291	AT3G21150.1	21798944
AT1G28050.1	KRH54177	AT3G48590.1	17138697
AT1G28050.1	KRH63772	AT3G48590.1	17138697
AT2G33500.1	KRH52586	AT1G71230.1	21798944
AT2G33500.1	KRH61926	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06865	Soybean	nucleus	88.57	89.5
CDY15696	Canola	nucleus	30.39	40.48
Bra030070.1-P	Field mustard	nucleus	30.39	37.99
VIT_14s0068g01380.t01	Wine grape	nucleus	43.38	37.19
Solyc05g024010.2.1	Tomato	nucleus	38.7	32.96
AT2G33500.1	Thale cress	nucleus	34.29	32.84
CDY30385	Canola	nucleus	32.99	32.82
CDY68819	Canola	nucleus	32.99	32.82
PGSC0003DMT400065377	Potato	nucleus	38.44	32.67
CDY66639	Canola	nucleus	34.03	32.51
CDY11755	Canola	nucleus	32.99	32.32
Bra010908.1-P	Field mustard	nucleus	34.03	31.34
CDX90119	Canola	nucleus	33.77	31.03
Bra041077.1-P	Field mustard	nucleus	32.73	30.88
AT1G28050.1	Thale cress	nucleus	34.29	30.48
KRH71535	Soybean	nucleus	25.45	28.82
KRG96381	Soybean	nucleus	25.97	28.49
KRH68113	Soybean	nucleus	25.71	28.37
KRH31920	Soybean	nucleus	25.45	28.16
GSMUA_Achr10P...	Banana	nucleus	32.47	27.29
GSMUA_Achr6P06130_001	Banana	nucleus	31.43	27.19
Os09t0509700-01	Rice	nucleus	30.39	27.15
CDY48428	Canola	nucleus	18.44	26.3
EES14176	Sorghum	nucleus	33.25	26.12
TraesCS7B01G161500.1	Wheat	nucleus	31.95	25.2
GSMUA_Achr11P...	Banana	nucleus	33.77	25.1
TraesCS7D01G264300.1	Wheat	nucleus	31.69	24.95
Zm00001d031662_P001	Maize	nucleus	31.43	24.74
TraesCS7A01G263500.1	Wheat	nucleus	31.43	24.69
KRH72628	Soybean	nucleus	23.38	22.22
KRH52295	Soybean	nucleus, plastid	17.66	21.94
KRH16989	Soybean	nucleus	23.38	21.9
KRH61628	Soybean	nucleus, plastid	17.4	21.68
KRH26833	Soybean	nucleus	23.38	21.28
KRH22524	Soybean	nucleus	23.38	21.28
KRH17709	Soybean	nucleus	22.6	21.27
KRG89998	Soybean	nucleus	22.08	20.78
KRH18308	Soybean	nucleus	19.48	20.78
KRG93763	Soybean	nucleus	19.22	20.22
KRH45169	Soybean	nucleus	17.66	19.54
KRH18980	Soybean	nucleus	18.18	19.18
KRH02915	Soybean	nucleus	18.44	18.98
KRH01455	Soybean	nucleus	17.14	18.75
HORVU0Hr1G021050.5	Barley	cytosol	20.52	18.68
KRG90917	Soybean	nucleus	16.88	14.84
KRH35868	Soybean	nucleus	16.1	14.16

Protein Annotations

EntrezGene:100786838	MapMan:15.5.1.2	EMBL:ACUP02012008	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_19G099700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	EMBL:HM068898	UniProt:I1N7Y1	InterPro:IPR000315	InterPro:IPR010402	EnsemblPlants:KRG94656
ProteinID:KRG94656	ProteinID:KRG94656.1	PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017
PANTHER:PTHR31717	PANTHER:PTHR31717:SF20	SMART:SM00336	UniParc:UPI000233E5C1	InterPro:Znf_B-box	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:34682143..34685552

Molecular Weight (calculated)

43300.7 Da

IEP (calculated)

7.143

GRAVY (calculated)

-0.655

Length

385 amino acids

Sequence
(BLAST)

001: MLPCDYCDSK PALLFCRADS AKLCLVCDQH VHAANALSLK HVRFQICDSC KSDTAVLRCS THNLVLCHNC DVDAHGADAS SLHHHHHHHR RLHGLSGCPS
101: VPEIASALGL DFRAQEPVVP TAASRDEVYE QVLEIARQRN NGLGAEQLKF DDSPGNDVVV VVDEMLIQQT PFTSLLMLQN SESEFDARKS NDNNGYGTEA
201: WDLHWNYNNP AYQPPQVWDF QLQKSTDCNE PRVVTFDGLE VPKLFQDVHN MNYSTIGDDI DILSRNNQSD QSSSSHAKRK EESNKKARGG LSSESTLFES
301: IPYSGTNNVV VMEHLVGGNE NVSTLKARVS LQELAKNRGD AMLRYKEKKK TRRYDKHIRY ESRKARADTR KRVRGRFVKA SDVQA

Best Arabidopsis Sequence Match ( AT2G33500.1 )
(BLAST)

001: MGTSTTESVV ACEFCGERTA VLFCRADTAK LCLPCDQHVH SANLLSRKHV RSQICDNCSK EPVSVRCFTD NLVLCQECDW DVHGSCSSSA THERSAVEGF
101: SGCPSVLELA AVWGIDLKGK KKEDDEDELT KNFGMGLDSW GSGSNIVQEL IVPYDVSCKK QSFSFGRSKQ VVFEQLELLK RGFVEGEGEI MVPEGINGGG
201: SISQPSPTTS FTSLLMSQSL CGNGMQWNAT NHSTGQNTQI WDFNLGQSRN PDEPSPVETK GSTFTFNNVT HLKNDTRTTN MNAFKESYQQ EDSVHSTSTK
301: GQETSKSNNI PAAIHSHKSS NDSCGLHCTE HIAITSNRAT RLVAVTNADL EQMAQNRDNA MQRYKEKKKT RRYDKTIRYE TRKARAETRL RVKGRFVKAT
401: DP

Arabidopsis Description

COL14Zinc finger protein CONSTANS-LIKE 14 [Source:UniProtKB/Swiss-Prot;Acc:O22800]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.