CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93763
KRG94656
KRH01455
KRH06865
KRH18308
KRH45169

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48590.1	KRG94656	AT1G28050.1	17138697
AT3G48590.1	KRH06865	AT1G28050.1	17138697
AT3G48590.1	KRG93763	AT5G15840.1	17138697
AT3G48590.1	KRH01455	AT5G15840.1	17138697
AT3G48590.1	KRH18308	AT5G15840.1	17138697
AT3G48590.1	KRH45169	AT5G15840.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63772	Soybean	nucleus	90.83	92.44
PGSC0003DMT400039470	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	75.98	75.65
Bra018046.1-P	Field mustard	nucleus	72.49	75.11
CDY08084	Canola	nucleus	72.49	75.11
CDY05857	Canola	nucleus	72.49	75.11
Solyc03g110860.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	75.11	74.78
AT3G48590.1	Thale cress	nucleus	75.11	73.5
VIT_17s0000g01130.t01	Wine grape	nucleus	78.6	70.87
GSMUA_Achr6P16620_001	Banana	cytosol	55.9	67.37
GSMUA_Achr10P...	Banana	nucleus	56.77	67.01
Bra038636.1-P	Field mustard	nucleus, plastid	73.36	61.76
CDX84419	Canola	plastid	72.49	58.66
CDY66668	Canola	plastid	69.43	58.24
HORVU4Hr1G062890.2	Barley	nucleus	57.64	54.77
TraesCS4D01G223400.1	Wheat	nucleus	57.64	54.55
TraesCS4B01G223000.1	Wheat	nucleus	57.64	54.55
TraesCS4A01G081000.1	Wheat	nucleus	57.21	54.36
Os03t0251350-00	Rice	nucleus	58.08	54.06
Zm00001d028432_P001	Maize	nucleus	57.21	53.47
KXG39763	Sorghum	nucleus	57.21	53.04
KRH68581	Soybean	cytoskeleton, cytosol, nucleus, plastid	51.09	49.37
KRH22187	Soybean	mitochondrion	25.76	47.97
KRH43702	Soybean	nucleus	55.46	46.86
KRH13746	Soybean	nucleus	54.59	46.64
KRG96853	Soybean	nucleus	52.4	46.51
KRH27143	Soybean	mitochondrion	24.89	46.34
KRG92828	Soybean	nucleus	52.4	45.63
KRH33966	Soybean	nucleus	51.97	45.08
KRH43409	Soybean	nucleus	36.24	40.49
KRH20891	Soybean	nucleus	38.43	36.21
KRH20896	Soybean	nucleus	29.69	35.42
KRH20893	Soybean	nucleus	35.81	30.71
KRH70416	Soybean	cytosol	16.59	26.21

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100818447	MapMan:15.5.51.3	EMBL:ACUP02003506	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_06G169600
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	UniProt:I1KC24	InterPro:IPR009072	EnsemblPlants:KRH54177
ProteinID:KRH54177	ProteinID:KRH54177.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF71	SUPFAM:SSF47113
UniParc:UPI000152A2E9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:14167215..14171796

Molecular Weight (calculated)

24977.4 Da

IEP (calculated)

5.021

GRAVY (calculated)

-0.428

Length

229 amino acids

Sequence
(BLAST)

001: METNNQQQQQ QGAQAQSGPY PVAGAGGSAG AGAGAPPPFQ HLLQQQQQQL QMFWSYQRQE IEHVNDFKNH QLPLARIKKI MKADEDVRMI SAEAPILFAK
101: ACELFILELT IRSWLHAEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRD EIKDDAALVG ATASGVPYYY PPIGQPAGMM IGRPAVDPAT GVYVQPPSQA
201: WQSVWQSAAE DASYGTGGAG AQRSLDGQS

Best Arabidopsis Sequence Match ( AT3G48590.1 )
(BLAST)

001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG

Arabidopsis Description

NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.