CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES14176

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48590.1	EES14176	AT1G28050.1	17138697
AT5G63470.1	EES14176	AT1G28050.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028432_P001	Maize	nucleus	95.14	95.92
Os03t0251350-00	Rice	nucleus	89.07	89.43
HORVU4Hr1G062890.2	Barley	nucleus	85.83	87.97
TraesCS4D01G223400.1	Wheat	nucleus	85.83	87.6
TraesCS4B01G223000.1	Wheat	nucleus	85.83	87.6
TraesCS4A01G081000.1	Wheat	nucleus	85.43	87.55
GSMUA_Achr6P16620_001	Banana	cytosol	48.99	63.68
GSMUA_Achr10P...	Banana	nucleus	49.39	62.89
CDY05857	Canola	nucleus	53.04	59.28
Bra018046.1-P	Field mustard	nucleus	52.63	58.82
CDY08084	Canola	nucleus	52.63	58.82
PGSC0003DMT400039470	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	53.85	57.83
KRH63772	Soybean	nucleus	52.63	57.78
Solyc06g072040.1.1	Tomato	nucleus	54.25	57.76
Solyc03g110860.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	53.44	57.39
AT3G48590.1	Thale cress	nucleus	54.25	57.27
KRH54177	Soybean	nucleus	53.04	57.21
AT5G63470.1	Thale cress	plastid	54.66	54.0
VIT_17s0000g01130.t01	Wine grape	nucleus	53.85	52.36
EER96945	Sorghum	nucleus	42.11	51.49
EES15444	Sorghum	nucleus	41.3	50.75
Bra038636.1-P	Field mustard	nucleus, plastid	53.85	48.9
CDX84419	Canola	plastid	53.44	46.64
KXG24590	Sorghum	nucleus	46.96	45.85
CDY66668	Canola	plastid	50.2	45.42
EER88787	Sorghum	nucleus	45.75	44.31
CDY48146	Canola	plastid	46.96	43.94
EES13127	Sorghum	mitochondrion	22.67	43.75
KXG24666	Sorghum	nucleus	34.41	37.95
OQU83181	Sorghum	nucleus	17.0	24.56
EES15819	Sorghum	nucleus	21.86	13.33
EES14613	Sorghum	nucleus	19.43	10.41
EES16679	Sorghum	nucleus	18.22	9.7

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	UniProt:A0A1B6QPC5	InterPro:CBFA_NFYB_domain	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628	GO:GO:0009791	GO:GO:0046982
GO:GO:0048579	InterPro:Histone-fold	InterPro:IPR009072	ProteinID:KXG39762.1	EnsemblPlants:KXG39763	ProteinID:KXG39763
ProteinID:KXG39763.1	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF67	EnsemblPlantsGene:SORBI_3001G435500	SUPFAM:SSF47113
UniParc:UPI0001FCCBD4	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:71389830..71392056

Molecular Weight (calculated)

26179.8 Da

IEP (calculated)

5.264

GRAVY (calculated)

-0.349

Length

247 amino acids

Sequence
(BLAST)

001: MDNQPLPYST GQPPAPGGTP VVPGVPGAAG PPPVPHHHLL QQQQAQLQAF WAYQRQEAER ASASDFKNHQ LPLARIKKIM KADEDVRMIS AEAPVLFAKA
101: CELFILELTI RSWLHAEENK RRTLQRNDVA AAIARTDVFD FLVDIVPREE AKEEPGSALG FAASGTGVVG GGAPGGAPAA GMPYYYPPMG QPAPMMPAWH
201: VPAWDPAWQQ GAADVDHSGS FSEEGQAGFA AGHGGPASFP PAPPSSE

Best Arabidopsis Sequence Match ( AT5G63470.1 )
(BLAST)

001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG

Arabidopsis Description

NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.