CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14613	Sorghum	nucleus	76.72	77.22
Zm00001d023466_P001	Maize	cytosol, mitochondrion, nucleus	66.38	70.16
EES15819	Sorghum	nucleus	45.47	52.1
OQU83181	Sorghum	nucleus	14.01	38.01
Os01t0102400-01	Rice	nucleus	26.29	28.98
Os01t0580400-01	Rice	nucleus	26.94	28.28
PGSC0003DMT400039471	Potato	nucleus	7.97	24.03
PGSC0003DMT400090065	Potato	nucleus	7.54	23.65
Solyc11g016920.1.1	Tomato	cytosol	6.9	23.19
Solyc03g110840.1.1	Tomato	nucleus	7.97	22.84
Solyc02g021330.1.1	Tomato	cytosol	7.33	22.22
Solyc03g110850.1.1	Tomato	cytosol	7.76	22.09
KRH70416	Soybean	cytosol	6.68	21.38
EER96945	Sorghum	nucleus	9.05	20.79
Solyc11g016910.1.1	Tomato	nucleus	4.09	20.43
EES15444	Sorghum	nucleus	8.84	20.4
KXG24666	Sorghum	nucleus	9.27	19.2
EES13127	Sorghum	mitochondrion	5.17	18.75
KXG24590	Sorghum	nucleus	10.13	18.58
KXG39763	Sorghum	nucleus	9.7	18.22
EER88787	Sorghum	nucleus	9.7	17.65

Protein Annotations

Gene3D:1.10.20.10	MapMan:35.2	UniProt:C5YS68	EnsemblPlants:EES16679	ProteinID:EES16679	ProteinID:EES16679.1
GO:GO:0000786	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3
InterPro:IPR009072	PFAM:PF00125	PANTHER:PTHR10252	PANTHER:PTHR10252:SF43	EnsemblPlantsGene:SORBI_3008G043000	SUPFAM:SSF47113
UniParc:UPI0001A885BB	RefSeq:XP_002442841.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:4230081..4231475

Molecular Weight (calculated)

51952.5 Da

IEP (calculated)

4.725

GRAVY (calculated)

-0.334

Length

464 amino acids

Sequence
(BLAST)

001: MDHPTNIRTS PRAPLSLFEQ QMIKEFWRNK QEKIVAIENF GERTIPVTCL KKVICAEMDK MMMTSDTPTF LTKACEIFVQ ELSVHAWVCA SSHNRSMILD
101: SDIAEVIASI ESYDFLNDVL RTHFEKYKSD PCLQSTKRPY HHMLTSQSST SLESSFHQYE MTQFIPQSTR YNPFLRIPPP LPPTNAKLVH LPSLPHPPQK
201: PCSKMANPIT PTPIVCGSFP PMTYMTKDLG FFRECISNNN VALDLMTPQQ LLPEALPPIP NNCYMSTIAS TDTYCVGSAS NSNLIAQDGD MAFHFSHVSL
301: KHFQLSSSST MDNIACPIYI NVAELNHTES DVTHIGNSTH GTSSEATFNV TDGQQKHMGD ETTASHHMNV VHGELDSEVV TTTNVDADDN NTNWDEIEMA
401: SDSMLMEFWK DVMMEEDPTP LPVTISPNDL IVLPSDMLEV EGCCHDSYLL DGIMSDTSTN GRHS

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.