Factsheet for Zm00001d023466_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14613	Sorghum	nucleus	70.84	67.46
EES16679	Sorghum	nucleus	70.16	66.38
Os01t0102400-01	Rice	nucleus	26.88	28.03
Os01t0580400-01	Rice	nucleus	27.56	27.38
PGSC0003DMT400039471	Potato	nucleus	8.66	24.68
PGSC0003DMT400090065	Potato	nucleus	8.2	24.32
Solyc11g016920.1.1	Tomato	cytosol	7.29	23.19
KRH70416	Soybean	cytosol	7.52	22.76
Solyc03g110850.1.1	Tomato	cytosol	8.2	22.09
Solyc03g110840.1.1	Tomato	nucleus	7.97	21.6
Zm00001d020874_P001	Maize	extracellular	9.57	21.0
Solyc02g021330.1.1	Tomato	cytosol	7.29	20.91
Zm00001d026648_P001	Maize	mitochondrion	5.92	20.47
Solyc11g016910.1.1	Tomato	nucleus	4.33	20.43
Zm00001d031310_P001	Maize	nucleus	8.88	19.5
Zm00001d052838_P001	Maize	nucleus	8.88	19.31
Zm00001d028432_P001	Maize	nucleus	10.25	18.37
Zm00001d046967_P001	Maize	nucleus	10.02	17.74
Zm00001d036648_P001	Maize	extracellular	9.79	17.55
Zm00001d024230_P001	Maize	nucleus, plastid	9.57	16.73
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	8.66	13.62

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:103640778	MapMan:35.2	ProteinID:AIB04484.1	ProteinID:AQK39348.1	GO:GO:0000786
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0046982	InterPro:Histone-fold	InterPro:Histone_H2A/H2B/H3	InterPro:IPR009072
UniProt:K7TX38	PFAM:PF00125	PANTHER:PTHR10252	PANTHER:PTHR10252:SF43	SUPFAM:SSF47113	UniParc:UPI000221AE9C
EnsemblPlantsGene:Zm00001d023466	EnsemblPlants:Zm00001d023466_P001	EnsemblPlants:Zm00001d023466_T001	SEG:seg	:	:

Description

CCAAT-HAP5-transcription factor 517Nuclear transcription factor Y subunit C-10

Coordinates

chr10:-:6445727..6447046

Molecular Weight (calculated)

49489.5 Da

IEP (calculated)

4.597

GRAVY (calculated)

-0.395

Length

439 amino acids

Sequence
(BLAST)

001: MDRPINIRTS PRTPLSLSEQ QTIKEFWRKK QEEIEAIEDF GEHTIPVTCL KKVICAKKGK MMMTSDTPTF MTKACKIFVQ ELSLSAWMCA NSHNRSIVLD
101: SDIAESIASI ESYGFLNDVL CAHLEKYKSD THLQSIKNPH HNRAINQSPT YLQPLSHQYQ MTQFIPQSTR YCPFIHIPPT LPQTNDIHMH LPLPLPPITY
201: MTKDLVFFEK GISNNDDAID LVTPPQLLPE ALSNIPNKCY MCNIASTDTY CVGSAKTCNF IAEDGDMVFH FPYVPSKPFQ LSTSLPMTNG GCSIYTDITE
301: LNHIKLKVTH IEKSTYGINP EATFNVIDGQ QHAGDETTAA NHMHTEHGEL DAEFVTTTNA NADDNNINWD EVDMASDSML MEFWRDVMMK EDPTSLPDTI
401: STNDTILDPS DMLELEGCCD DSYLLDDVMS NTSNDVRHG

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.