Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g016920.1.1 | Tomato | cytosol | 74.85 | 88.41 |
| Solyc11g016910.1.1 | Tomato | nucleus | 35.58 | 62.37 |
| Solyc02g021330.1.1 | Tomato | cytosol | 57.06 | 60.78 |
| Solyc03g110840.1.1 | Tomato | nucleus | 56.44 | 56.79 |
| Solyc08g007960.1.1 | Tomato | mitochondrion | 26.38 | 34.68 |
| Solyc06g072040.1.1 | Tomato | nucleus | 45.4 | 31.9 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 44.17 | 31.3 |
| Solyc03g111460.1.1 | Tomato | cytosol | 43.56 | 24.65 |
| Solyc01g079870.2.1 | Tomato | nucleus | 37.42 | 23.64 |
| KRH70416 | Soybean | cytosol | 20.86 | 23.45 |
| Solyc03g111470.1.1 | Tomato | nucleus | 38.04 | 22.71 |
| OQU83181 | Sorghum | nucleus | 20.25 | 19.3 |
| Solyc03g111450.1.1 | Tomato | nucleus | 36.2 | 18.55 |
| HORVU7Hr1G082930.1 | Barley | nucleus | 27.61 | 11.06 |
| Os05t0304800-01 | Rice | nucleus | 22.09 | 11.01 |
| TraesCS7B01G248300.1 | Wheat | cytosol | 26.99 | 10.68 |
| TraesCS7A01G336700.1 | Wheat | cytosol | 26.99 | 10.63 |
| TraesCS7D01G344400.1 | Wheat | cytosol | 25.77 | 10.22 |
| Os10t0191900-00 | Rice | nucleus | 20.86 | 10.15 |
| EES15819 | Sorghum | nucleus | 25.15 | 10.12 |
| Os01t0102400-01 | Rice | nucleus | 25.77 | 9.98 |
| Os01t0580400-01 | Rice | nucleus | 25.77 | 9.5 |
| EES14613 | Sorghum | nucleus | 23.93 | 8.46 |
| Zm00001d023466_P001 | Maize | cytosol, mitochondrion, nucleus | 22.09 | 8.2 |
| EES16679 | Sorghum | nucleus | 22.09 | 7.76 |
| Solyc02g091030.2.1 | Tomato | nucleus | 24.54 | 5.91 |
Protein Annotations
| EnsemblPlants:Solyc03g110850.1.1 | EnsemblPlantsGene:Solyc03g110850.1 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF39 | PFAM:PF00808 | SEG:seg |
| SUPFAM:SSF47113 | UniParc:UPI0002768B2A | UniProt:K4BJU8 | MapMan:15.5.51.3 | : | : |
Description
Nuclear transcription factor Y subunit C [Source:UniProtKB/TrEMBL;Acc:K4BJU8]
Coordinates
chr3:+:61591009..61591500
Molecular Weight (calculated)
18915.7 Da
IEP (calculated)
5.100
GRAVY (calculated)
-0.575
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MENNYEKSAV NAGQSAAYPM LSPPHLEKKQ EKLEMFWTDK RREMENVIDF KSNLLPRIHR IKKIMKTDKD VRMIATESPV LLAKACELFI QELTLRSWFK
101: AEENHRRILK KDDVTDVIME TDTLDFLLDD DANVTDGSTQ NVVPFYVAEG TMGVHTDNLD HQM
101: AEENHRRILK KDDVTDVIME TDTLDFLLDD DANVTDGSTQ NVVPFYVAEG TMGVHTDNLD HQM
001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
Arabidopsis Description
NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.