Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g016920.1.1 | Tomato | cytosol | 19.3 | 23.91 |
| EES13127 | Sorghum | mitochondrion | 17.54 | 23.44 |
| Solyc02g021330.1.1 | Tomato | cytosol | 19.88 | 22.22 |
| PGSC0003DMT400090065 | Potato | nucleus | 18.13 | 20.95 |
| Solyc03g110840.1.1 | Tomato | nucleus | 19.3 | 20.37 |
| Solyc03g110850.1.1 | Tomato | cytosol | 19.3 | 20.25 |
| EER96945 | Sorghum | nucleus | 23.39 | 19.8 |
| PGSC0003DMT400039471 | Potato | nucleus | 17.54 | 19.48 |
| Solyc11g016910.1.1 | Tomato | nucleus | 10.53 | 19.35 |
| Os05t0304800-01 | Rice | nucleus | 36.26 | 18.96 |
| Os10t0191900-00 | Rice | nucleus | 36.26 | 18.51 |
| EES15444 | Sorghum | nucleus | 21.64 | 18.41 |
| EER88787 | Sorghum | nucleus | 26.32 | 17.65 |
| KXG24666 | Sorghum | nucleus | 22.81 | 17.41 |
| KRH70416 | Soybean | cytosol | 14.62 | 17.24 |
| KXG39763 | Sorghum | nucleus | 24.56 | 17.0 |
| KXG24590 | Sorghum | nucleus | 25.15 | 17.0 |
| EES15819 | Sorghum | nucleus | 36.84 | 15.56 |
| TraesCS7B01G248300.1 | Wheat | cytosol | 36.84 | 15.29 |
| TraesCS7D01G344400.1 | Wheat | cytosol | 36.26 | 15.09 |
| TraesCS7A01G336700.1 | Wheat | cytosol | 36.26 | 14.98 |
| HORVU7Hr1G082930.1 | Barley | nucleus | 34.5 | 14.5 |
| EES14613 | Sorghum | nucleus | 38.6 | 14.32 |
| EES16679 | Sorghum | nucleus | 38.01 | 14.01 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:35.2 | UniProt:A0A1Z5RI22 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:IPR009072 | EnsemblPlants:OQU83181 | ProteinID:OQU83181 | ProteinID:OQU83181.1 | PFAM:PF00808 |
| PANTHER:PTHR10252 | PANTHER:PTHR10252:SF68 | EnsemblPlantsGene:SORBI_3005G089101 | SUPFAM:SSF47113 | UniParc:UPI000B8BAEBD | SEG:seg |
Description
hypothetical protein
Coordinates
chr5:-:12782093..12784208
Molecular Weight (calculated)
18624.6 Da
IEP (calculated)
4.261
GRAVY (calculated)
-0.477
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNGSEDRSE HPQELNGSSP TPLMTPQEQE IDDFWRRRQE DIENLMNFNN HNLPIENIEE IIRANLGSVM TSSDTPPYVT KLCELFIQEL AIRAWMCASS
101: HGRYTILESD ITEAINSTKP YSFLNGVLPS DGSSPLLSGN GSSPLGSSGS SPCSSSTTNL APLSSTMALG R
101: HGRYTILESD ITEAINSTKP YSFLNGVLPS DGSSPLLSGN GSSPLGSSGS SPCSSSTTNL APLSSTMALG R
001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
Arabidopsis Description
NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.