CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003334.1-P	Field mustard	nucleus	35.27	42.93
CDX67737	Canola	nucleus	35.27	42.02
AT1G56170.2	Thale cress	nucleus	36.61	41.21
EER96945	Sorghum	nucleus	36.61	40.59
EES15444	Sorghum	nucleus	36.16	40.3
EES13127	Sorghum	mitochondrion	20.98	36.72
KXG24590	Sorghum	nucleus	39.73	35.18
VIT_19s0085g00520.t01	Wine grape	cytosol	41.96	34.94
KXG39763	Sorghum	nucleus	37.95	34.41
KRH13746	Soybean	nucleus	41.07	34.33
KRH43702	Soybean	nucleus	41.07	33.95
EER88787	Sorghum	nucleus	38.39	33.73
GSMUA_Achr11P...	Banana	cytosol	36.16	31.89
GSMUA_Achr5P26790_001	Banana	cytosol	30.36	30.36
Os08t0206500-00	Rice	nucleus	36.61	29.08
GSMUA_Achr11P...	Banana	cytosol	38.39	28.01
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	29.46	25.58
OQU83181	Sorghum	nucleus	17.41	22.81
EES15819	Sorghum	nucleus	19.2	10.62
EES14613	Sorghum	nucleus	19.64	9.54
EES16679	Sorghum	nucleus	19.2	9.27

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	UniProt:C5YID9	InterPro:CBFA_NFYB_domain	ProteinID:EES14676.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlants:KXG24666	ProteinID:KXG24666	ProteinID:KXG24666.1
PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF67	EnsemblPlantsGene:SORBI_3007G070100	SUPFAM:SSF47113	UniParc:UPI0001A87DBB
RefSeq:XP_002445181.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:7786577..7789414

Molecular Weight (calculated)

25145.9 Da

IEP (calculated)

4.452

GRAVY (calculated)

-0.766

Length

224 amino acids

Sequence
(BLAST)

001: MDTEGQPSES AVSEGVTNGD AIPSDFQDDA PVIQPPLSHH HQVASQSQQD DHCHCQQPLQ AFWSGQLAEI KQTTNFKTHS LPLARIKKIM KADSNIPKRV
101: AGEAPLLFAK ACEMFIQELT LRAWLHTEED MRRTLQKKDV TAALASTEVF DFLVADSSTD NKPKGNGEGL PPPTTAKDDD DSYGDYYWDD YSPPWSPEPP
201: SPDLRNVTCD DPRYYTYIHD YYSL

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.