Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67737 | Canola | nucleus | 97.83 | 95.74 |
| AT1G56170.2 | Thale cress | nucleus | 77.72 | 71.86 |
| VIT_19s0085g00520.t01 | Wine grape | cytosol | 74.46 | 50.93 |
| Bra030749.1-P | Field mustard | nucleus | 59.78 | 50.46 |
| KRH13746 | Soybean | nucleus | 72.28 | 49.63 |
| KRH43702 | Soybean | nucleus | 72.28 | 49.08 |
| Bra018589.1-P | Field mustard | nucleus | 58.15 | 48.64 |
| TraesCS6D01G147300.1 | Wheat | nucleus | 67.39 | 48.44 |
| TraesCS6A01G157900.1 | Wheat | nucleus | 67.39 | 48.44 |
| KXG24590 | Sorghum | nucleus | 65.76 | 47.83 |
| Bra031651.1-P | Field mustard | nucleus | 59.24 | 47.81 |
| HORVU6Hr1G032200.1 | Barley | nucleus | 67.39 | 47.69 |
| Os06t0667100-01 | Rice | cytosol, nucleus, plastid | 64.13 | 47.2 |
| Bra018046.1-P | Field mustard | nucleus | 56.52 | 47.06 |
| Os02t0170500-01 | Rice | nucleus | 65.76 | 46.72 |
| Zm00001d046967_P001 | Maize | nucleus | 62.5 | 46.37 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 63.04 | 46.22 |
| TraesCS7D01G463100.1 | Wheat | nucleus | 63.04 | 45.14 |
| EER88787 | Sorghum | nucleus | 62.5 | 45.1 |
| TraesCS7B01G377500.1 | Wheat | nucleus | 61.96 | 44.53 |
| Zm00001d036648_P001 | Maize | extracellular | 59.24 | 44.49 |
| GSMUA_Achr11P... | Banana | cytosol | 60.33 | 43.7 |
| TraesCS7A01G475400.1 | Wheat | nucleus | 60.33 | 43.19 |
| TraesCS6B01G185700.1 | Wheat | cytosol | 67.39 | 42.61 |
| HORVU7Hr1G108370.1 | Barley | nucleus | 58.7 | 41.54 |
| TraesCS7D01G462100.1 | Wheat | nucleus | 42.93 | 40.1 |
| Bra038636.1-P | Field mustard | nucleus, plastid | 57.07 | 38.6 |
| TraesCS7B01G376500.1 | Wheat | nucleus | 45.11 | 36.4 |
| TraesCS7A01G474800.1 | Wheat | nucleus | 45.65 | 35.9 |
| TraesCS7D01G462200.1 | Wheat | nucleus | 51.09 | 35.88 |
| TraesCS3D01G102500.1 | Wheat | nucleus | 45.11 | 35.62 |
| KXG24666 | Sorghum | nucleus | 42.93 | 35.27 |
| TraesCS7B01G377000.1 | Wheat | nucleus | 44.02 | 34.76 |
| TraesCS7B01G377200.1 | Wheat | nucleus | 46.2 | 34.27 |
| Os08t0206500-00 | Rice | nucleus | 44.57 | 29.08 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | EnsemblPlantsGene:Bra003334 | EnsemblPlants:Bra003334.1 | EnsemblPlants:Bra003334.1-P | InterPro:CBFA_NFYB_domain |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045893 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M4CGK1 |
| PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 | SUPFAM:SSF47113 | UniParc:UPI000254168F | : |
Description
AT1G56170 (E=9e-069) HAP5B, ATHAP5B, NF-YC2 | NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2); DNA binding / transcription activator/ transcription factor
Coordinates
chrA07:+:12648201..12648755
Molecular Weight (calculated)
21261.4 Da
IEP (calculated)
4.896
GRAVY (calculated)
-0.537
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHSEEGQPQ QGVMDYVPPR AYQSGMPSSM AFHHQQLQLF WATQMQEIEQ TTDFKNHTLP LARIKKIMKA DEDVRMISAE APVIFAKACE MFILELTLRS
101: WIHTEENKRR TLQKNDIAAA ISRTDVFDFL VDIIPKDDLK EEGLGVTKLT MPTVVDSPPY YYLQQQQGVM PWAQGNLEQH HDDQ
101: WIHTEENKRR TLQKNDIAAA ISRTDVFDFL VDIIPKDDLK EEGLGVTKLT MPTVVDSPPY YYLQQQQGVM PWAQGNLEQH HDDQ
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.