Factsheet for Bra038636.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010908.1-P
Bra030070.1-P
Bra041077.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63470.1	Bra010908.1-P	AT1G28050.1	17138697
AT5G63470.1	Bra030070.1-P	AT1G28050.1	17138697
AT5G63470.1	Bra041077.1-P	AT1G28050.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G63470.1	Thale cress	plastid	80.88	88.0
CDY66668	Canola	plastid	88.24	87.91
Bra018046.1-P	Field mustard	nucleus	71.32	87.78
CDX84419	Canola	plastid	90.81	87.28
Solyc06g072040.1.1	Tomato	nucleus	64.34	75.43
PGSC0003DMT400039470	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	63.24	74.78
Solyc03g110860.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	62.87	74.35
KRH54177	Soybean	nucleus	61.76	73.36
KRH63772	Soybean	nucleus	60.29	72.89
GSMUA_Achr6P16620_001	Banana	cytosol	49.63	71.05
VIT_17s0000g01130.t01	Wine grape	nucleus	65.81	70.47
GSMUA_Achr10P...	Banana	nucleus	50.0	70.1
Bra003334.1-P	Field mustard	nucleus	38.6	57.07
HORVU4Hr1G062890.2	Barley	nucleus	50.0	56.43
TraesCS4B01G223000.1	Wheat	nucleus	50.0	56.2
TraesCS4D01G223400.1	Wheat	nucleus	50.0	56.2
TraesCS4A01G081000.1	Wheat	nucleus	49.63	56.02
Os03t0251350-00	Rice	nucleus	50.37	55.69
Zm00001d028432_P001	Maize	nucleus	48.9	54.29
KXG39763	Sorghum	nucleus	48.9	53.85
Bra030749.1-P	Field mustard	nucleus	42.28	52.75
Bra018589.1-P	Field mustard	nucleus	42.65	52.73
Bra031651.1-P	Field mustard	nucleus	43.75	52.19

Protein Annotations

EnsemblPlants:Bra038636.1	EnsemblPlants:Bra038636.1-P	EnsemblPlantsGene:Bra038636	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982
InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252	PANTHER:PTHR10252:SF71	PFAM:PF00808
SEG:seg	SUPFAM:SSF47113	UniParc:UPI000253F260	UniProt:M4FC20	MapMan:15.5.51.3	:

Description

AT5G63470 (E=4e-084) NF-YC4 | NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4); DNA binding / transcription factor

Coordinates

chrA06:-:14310113..14310931

Molecular Weight (calculated)

29716.6 Da

IEP (calculated)

5.643

GRAVY (calculated)

-0.259

Length

272 amino acids

Sequence
(BLAST)

001: MDNNNQQPPP PPTSVYPPAS AATAIPPPPP SGSTPIIPGG GGASYHHLLQ QQLQQLQMFW SYQRKEIEQV NDFKNHQLPL ARIKKIMKAD EDVRMISAEA
101: PILFAKACEL FILELTIRSW LHAEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPREEIKE EEEAALGSMV AAPAVSGVPY YYPPMGQPAV PGGMMIGRPA
201: MDPSGVYAQP PSQAWQSVWQ NSAAGDDVSY GSGGSSGGHG NLDNQGLVKF FSFNRNLTAA MYLVLKLVMS LL

Best Arabidopsis Sequence Match ( AT5G63470.1 )
(BLAST)

001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG

Arabidopsis Description

NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.