Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g089500.2.1 | |
| Solyc05g024010.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G48590.1 | Solyc05g024010.2.1 | AT1G28050.1 | 17138697 |
| AT3G48590.1 | Solyc02g089500.2.1 | AT5G15840.1 | 17138697 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 88.36 | 89.13 |
| CDY05857 | Canola | nucleus | 75.86 | 79.64 |
| Bra018046.1-P | Field mustard | nucleus | 75.0 | 78.73 |
| CDY08084 | Canola | nucleus | 75.0 | 78.73 |
| AT3G48590.1 | Thale cress | nucleus | 78.02 | 77.35 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 59.48 | 72.63 |
| GSMUA_Achr10P... | Banana | nucleus | 57.33 | 68.56 |
| Bra038636.1-P | Field mustard | nucleus, plastid | 75.43 | 64.34 |
| CDX84419 | Canola | plastid | 75.0 | 61.48 |
| CDY66668 | Canola | plastid | 71.12 | 60.44 |
| HORVU4Hr1G062890.2 | Barley | nucleus | 59.05 | 56.85 |
| TraesCS4D01G223400.1 | Wheat | nucleus | 59.05 | 56.61 |
| TraesCS4B01G223000.1 | Wheat | nucleus | 59.05 | 56.61 |
| TraesCS4A01G081000.1 | Wheat | nucleus | 58.62 | 56.43 |
| Os03t0251350-00 | Rice | nucleus | 59.05 | 55.69 |
| Zm00001d028432_P001 | Maize | nucleus | 57.76 | 54.69 |
| KXG39763 | Sorghum | nucleus | 57.76 | 54.25 |
| Solyc08g007960.1.1 | Tomato | mitochondrion | 26.72 | 50.0 |
| Solyc01g079870.2.1 | Tomato | nucleus | 51.72 | 46.51 |
| Solyc11g016920.1.1 | Tomato | cytosol | 27.59 | 46.38 |
| Solyc03g110850.1.1 | Tomato | cytosol | 31.9 | 45.4 |
| Solyc02g021330.1.1 | Tomato | cytosol | 28.02 | 42.48 |
| Solyc03g110840.1.1 | Tomato | nucleus | 29.31 | 41.98 |
| Solyc11g016910.1.1 | Tomato | nucleus | 14.22 | 35.48 |
| Solyc03g111470.1.1 | Tomato | nucleus | 36.64 | 31.14 |
| Solyc03g111460.1.1 | Tomato | cytosol | 38.36 | 30.9 |
| Solyc03g111450.1.1 | Tomato | nucleus | 40.52 | 29.56 |
| Solyc02g091030.2.1 | Tomato | nucleus | 27.59 | 9.45 |
Protein Annotations
| EnsemblPlants:Solyc06g072040.1.1 | EnsemblPlantsGene:Solyc06g072040.1 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 | PFAM:PF00808 | SEG:seg |
| SUPFAM:SSF47113 | UniParc:UPI0002765580 | UniProt:K4C8S6 | MapMan:15.5.51.3 | : | : |
Description
No Description!
Coordinates
chr6:-:44398375..44399073
Molecular Weight (calculated)
25373.9 Da
IEP (calculated)
5.022
GRAVY (calculated)
-0.426
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNNPHQSPT EAAAAAAAAA AAAQSATYPS QTPYHHLLQQ QQQQLQMFWT YQRQEIEQVN DFKNHQLPLA RIKKIMKADE DVRMISAEAP VLFAKACELF
101: ILELTIRSWL HAEENKRRTL QKNDIAAAIT RTDIFDFLVD IVPRDEIKDE GVGLGPGIVG STASGVPYYY PPMGQPAPGG VMLGRPAVPG VDPSMYVHPP
201: PSQAWQSVWQ TGDDNSYASG GSSGQGNLDG QM
101: ILELTIRSWL HAEENKRRTL QKNDIAAAIT RTDIFDFLVD IVPRDEIKDE GVGLGPGIVG STASGVPYYY PPMGQPAPGG VMLGRPAVPG VDPSMYVHPP
201: PSQAWQSVWQ TGDDNSYASG GSSGQGNLDG QM
001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG
Arabidopsis Description
NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.