Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g089500.2.1 | |
| Solyc05g024010.2.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g111460.1.1 | Tomato | cytosol | 81.69 | 77.43 |
| Solyc11g016920.1.1 | Tomato | cytosol | 20.15 | 39.86 |
| Solyc02g021330.1.1 | Tomato | cytosol | 21.61 | 38.56 |
| Solyc03g110840.1.1 | Tomato | nucleus | 22.71 | 38.27 |
| Solyc03g110850.1.1 | Tomato | cytosol | 22.71 | 38.04 |
| Solyc11g016910.1.1 | Tomato | nucleus | 12.82 | 37.63 |
| Solyc03g110860.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 31.5 | 37.39 |
| Solyc06g072040.1.1 | Tomato | nucleus | 31.14 | 36.64 |
| Solyc08g007960.1.1 | Tomato | mitochondrion | 15.38 | 33.87 |
| AT5G27910.1 | Thale cress | nucleus | 21.25 | 31.02 |
| AT5G50480.1 | Thale cress | nucleus | 22.34 | 30.2 |
| Solyc01g079870.2.1 | Tomato | nucleus | 28.21 | 29.84 |
| AT5G50490.1 | Thale cress | cytosol | 20.15 | 29.57 |
| AT5G50470.1 | Thale cress | nucleus | 17.95 | 23.11 |
| Solyc03g111450.1.1 | Tomato | nucleus | 26.37 | 22.64 |
| Solyc02g091030.2.1 | Tomato | nucleus | 20.88 | 8.42 |
Protein Annotations
| EnsemblPlants:Solyc03g111470.1.1 | EnsemblPlantsGene:Solyc03g111470.1 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF39 | PFAM:PF00808 | SEG:seg |
| SUPFAM:SSF47113 | UniParc:UPI0002768F06 | UniProt:K4BK10 | MapMan:15.5.51.3 | : | : |
Description
No Description!
Coordinates
chr3:-:62072304..62075481
Molecular Weight (calculated)
29748.0 Da
IEP (calculated)
8.081
GRAVY (calculated)
-0.264
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHSDPMAA NVEVATSVNA EAAAAAVNVK AVAVAEATAQ PVVNANNYLL QQQLQLFWAA QLQEIMQIGD FEGHSLPIFR IKKIMKSDKE VRMISAESPI
101: LLDKACELFI QELTHRSWLK AQECQRRTLK KIDFFTTEEE APTYVPGMLG NIPNHIPYCY SPMGPPAPPM APLAPSMGPP APSMEPPAPS MPAPPRGIMG
201: RRAMPWVTTS MHVPPPLYPR QFGWYAAGDN PYATRGSSGQ GSGDPQSGMM EPPRLIGYRM ISKPSGAIWR SGH
101: LLDKACELFI QELTHRSWLK AQECQRRTLK KIDFFTTEEE APTYVPGMLG NIPNHIPYCY SPMGPPAPPM APLAPSMGPP APSMEPPAPS MPAPPRGIMG
201: RRAMPWVTTS MHVPPPLYPR QFGWYAAGDN PYATRGSSGQ GSGDPQSGMM EPPRLIGYRM ISKPSGAIWR SGH
001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
Arabidopsis Description
NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.