Factsheet for Solyc03g111450.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g089500.2.1
Solyc05g024010.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50470.1	Solyc05g024010.2.1	AT1G28050.1	17138697
AT5G50470.1	Solyc02g089500.2.1	AT5G15840.1	17138697
AT5G50480.1	Solyc05g024010.2.1	AT1G28050.1	17138697
AT5G50480.1	Solyc02g089500.2.1	AT5G15840.1	17138697
AT5G50490.1	Solyc05g024010.2.1	AT1G28050.1	17138697
AT5G50490.1	Solyc02g089500.2.1	AT5G15840.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039254	Potato	nucleus	67.61	84.98
Solyc03g110860.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	30.5	42.17
Solyc06g072040.1.1	Tomato	nucleus	29.56	40.52
Solyc11g016920.1.1	Tomato	cytosol	16.35	37.68
Solyc03g110850.1.1	Tomato	cytosol	18.55	36.2
AT5G50490.1	Thale cress	cytosol	21.07	36.02
Solyc08g007960.1.1	Tomato	mitochondrion	13.84	35.48
Solyc02g021330.1.1	Tomato	cytosol	16.35	33.99
Solyc01g079870.2.1	Tomato	nucleus	26.73	32.95
Solyc03g110840.1.1	Tomato	nucleus	16.67	32.72
AT5G27910.1	Thale cress	nucleus	19.18	32.62
AT5G50470.1	Thale cress	nucleus	20.75	31.13
AT5G50480.1	Thale cress	nucleus	18.87	29.7
Solyc03g111460.1.1	Tomato	cytosol	25.47	28.12
Solyc11g016910.1.1	Tomato	nucleus	8.18	27.96
Solyc03g111470.1.1	Tomato	nucleus	22.64	26.37
Solyc02g091030.2.1	Tomato	nucleus	22.33	10.49

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	UniProt:K4BK08	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF68	SUPFAM:SSF47113
EnsemblPlantsGene:Solyc03g111450.1	EnsemblPlants:Solyc03g111450.1.1	UniParc:UPI0002768F04	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:62040663..62041728

Molecular Weight (calculated)

35309.5 Da

IEP (calculated)

4.439

GRAVY (calculated)

-0.428

Length

318 amino acids

Sequence
(BLAST)

001: MENNDQQPME INQQQPMENN DQQAMEINQQ QPMENNDQQP MEINQQQPVE PLYPGYPFYQ MLLHQQHQQL QLQLQQQVEE QMRIFWNCQR EEIEEMDDFK
101: HHHFPISRIK RIIKSENNAI KLSAETPILF SKACELFVLE LTLRSWFHAQ QNNRGSLKKT DFAAAIRRTE VFDFLADVVP EDEINEVATG FGPGMVGPTV
201: GGGFPYFYPP MGLLAMPGVM PGGPAMLGVM PGGPAMLGPM PGGPAMPGPM IGGPSMPGPM IGGPAVAVVA PSVYVQPPLQ AWQPAGDNPN AGGESDGQGG
301: IFLLFLRSDE GNVFRRRV

Best Arabidopsis Sequence Match ( AT3G48590.1 )
(BLAST)

001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG

Arabidopsis Description

NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.