Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G50490.1 | Thale cress | cytosol | 68.98 | 69.35 |
| AT5G50480.1 | Thale cress | nucleus | 49.73 | 46.04 |
| AT3G48590.1 | Thale cress | nucleus | 43.85 | 35.04 |
| AT5G63470.1 | Thale cress | plastid | 43.85 | 32.8 |
| AT1G56170.2 | Thale cress | nucleus | 33.16 | 31.16 |
| AT1G54830.3 | Thale cress | nucleus | 35.83 | 30.88 |
| AT1G08970.4 | Thale cress | nucleus | 36.36 | 29.44 |
| AT5G50470.1 | Thale cress | nucleus | 31.55 | 27.83 |
| PGSC0003DMT400039254 | Potato | nucleus | 32.09 | 23.72 |
| Solyc03g111460.1.1 | Tomato | cytosol | 33.69 | 21.88 |
| AT5G38140.1 | Thale cress | nucleus | 22.46 | 21.54 |
| Solyc03g111470.1.1 | Tomato | nucleus | 31.02 | 21.25 |
| Solyc03g111450.1.1 | Tomato | nucleus | 32.62 | 19.18 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | EntrezGene:832857 | EMBL:AC007399 | EMBL:AC007627 | ProteinID:AED93743.1 |
| ArrayExpress:AT5G27910 | EnsemblPlantsGene:AT5G27910 | RefSeq:AT5G27910 | TAIR:AT5G27910 | RefSeq:AT5G27910-TAIR-G | EnsemblPlants:AT5G27910.1 |
| TAIR:AT5G27910.1 | ProteinID:BAH30604.1 | UniProt:C0SVR3 | InterPro:CBFA_NFYB_domain | EMBL:DQ056694 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | Symbol:NF-YC8 | RefSeq:NP_198143.1 | PFAM:PF00808 | PO:PO:0003011 | PO:PO:0009005 |
| PANTHER:PTHR10252 | PANTHER:PTHR10252:SF39 | UniProt:Q4PSE2 | SUPFAM:SSF47113 | UniParc:UPI0000162616 | SEG:seg |
Description
NFYC8Nuclear transcription factor Y subunit C-8 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSE2]
Coordinates
chr5:-:9940669..9941447
Molecular Weight (calculated)
20610.6 Da
IEP (calculated)
4.429
GRAVY (calculated)
-0.451
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MENNNGNNQL PPKGNEQLKS FWSKEMEGNL DFKNHDLPIT RIKKIMKYDP DVTMIASEAP ILLSKACEMF IMDLTMRSWL HAQESKRVTL QKSNVDAAVA
101: QTVIFDFLLD DDIEVKRESV AAAADPVAMP PIDDGELPPG MVIGTPVCCS LGIHQPQPQM QAWPGAWTSV SGEEEEARGK KGGDDGN
101: QTVIFDFLLD DDIEVKRESV AAAADPVAMP PIDDGELPPG MVIGTPVCCS LGIHQPQPQM QAWPGAWTSV SGEEEEARGK KGGDDGN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.