Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G27910.1 | Thale cress | nucleus | 46.04 | 49.73 |
| AT5G50490.1 | Thale cress | cytosol | 45.54 | 49.46 |
| AT3G48590.1 | Thale cress | nucleus | 45.05 | 38.89 |
| AT5G63470.1 | Thale cress | plastid | 45.05 | 36.4 |
| AT1G56170.2 | Thale cress | nucleus | 34.65 | 35.18 |
| AT1G54830.3 | Thale cress | nucleus | 37.13 | 34.56 |
| AT1G08970.4 | Thale cress | nucleus | 38.61 | 33.77 |
| AT5G50470.1 | Thale cress | nucleus | 34.16 | 32.55 |
| PGSC0003DMT400039254 | Potato | nucleus | 31.19 | 24.9 |
| Solyc03g111460.1.1 | Tomato | cytosol | 34.65 | 24.31 |
| AT5G38140.1 | Thale cress | nucleus | 23.27 | 24.1 |
| Solyc03g111470.1.1 | Tomato | nucleus | 30.2 | 22.34 |
| Solyc03g111450.1.1 | Tomato | nucleus | 29.7 | 18.87 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | EntrezGene:835116 | UniProt:A0A178UER5 | EMBL:AB493785 | ProteinID:AED95950.1 |
| ArrayExpress:AT5G50480 | EnsemblPlantsGene:AT5G50480 | RefSeq:AT5G50480 | TAIR:AT5G50480 | RefSeq:AT5G50480-TAIR-G | EnsemblPlants:AT5G50480.1 |
| TAIR:AT5G50480.1 | Unigene:At.29728 | ProteinID:BAB09133.1 | EMBL:BT014783 | EMBL:BT015006 | UniProt:C0SVT2 |
| InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | Symbol:NF-YC6 | RefSeq:NP_199859.1 | ProteinID:OAO91602.1 |
| PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF39 | UniProt:Q9FGP7 | SUPFAM:SSF47113 | UniParc:UPI00000A947A |
| SEG:seg | : | : | : | : | : |
Description
NFYC6Nuclear transcription factor Y subunit C [Source:UniProtKB/TrEMBL;Acc:A0A178UER5]
Coordinates
chr5:-:20557574..20558487
Molecular Weight (calculated)
22010.7 Da
IEP (calculated)
4.343
GRAVY (calculated)
-0.575
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MAENNNNNGD NMNNDNHQQP PSYSQLPPMA SSNPQLRNYW IEQMETVSDF KNRQLPLARI KKIMKADPDV HMVSAEAPII FAKACEMFIV DLTMRSWLKA
101: EENKRHTLQK SDISNAVASS FTYDFLLDVV PKDESIATAD PGFVAMPHPD GGGVPQYYYP PGVVMGTPMV GSGMYAPSQA WPAAAGDGED DAEDNGGNGG
201: GN
101: EENKRHTLQK SDISNAVASS FTYDFLLDVV PKDESIATAD PGFVAMPHPD GGGVPQYYYP PGVVMGTPMV GSGMYAPSQA WPAAAGDGED DAEDNGGNGG
201: GN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.