Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G50480.1 | Thale cress | nucleus | 32.55 | 34.16 |
| AT5G50490.1 | Thale cress | cytosol | 28.3 | 32.26 |
| AT1G56170.2 | Thale cress | nucleus | 30.19 | 32.16 |
| AT5G27910.1 | Thale cress | nucleus | 27.83 | 31.55 |
| AT5G38140.1 | Thale cress | nucleus | 25.94 | 28.21 |
| PGSC0003DMT400039254 | Potato | nucleus | 32.55 | 27.27 |
| AT1G54830.3 | Thale cress | nucleus | 27.83 | 27.19 |
| AT3G48590.1 | Thale cress | nucleus | 29.25 | 26.5 |
| AT5G63470.1 | Thale cress | plastid | 30.66 | 26.0 |
| AT1G08970.4 | Thale cress | nucleus | 27.83 | 25.54 |
| Solyc03g111450.1.1 | Tomato | nucleus | 31.13 | 20.75 |
| Solyc03g111460.1.1 | Tomato | cytosol | 25.94 | 19.1 |
| Solyc03g111470.1.1 | Tomato | nucleus | 23.11 | 17.95 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | EntrezGene:835115 | ProteinID:AED95949.1 | ArrayExpress:AT5G50470 | EnsemblPlantsGene:AT5G50470 |
| RefSeq:AT5G50470 | TAIR:AT5G50470 | RefSeq:AT5G50470-TAIR-G | EnsemblPlants:AT5G50470.1 | TAIR:AT5G50470.1 | ProteinID:BAB09132.1 |
| ProteinID:BAH30622.1 | UniProt:C0SVT1 | InterPro:CBFA_NFYB_domain | EMBL:DQ056712 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 |
| Symbol:NF-YC7 | RefSeq:NP_199858.1 | PFAM:PF00808 | PO:PO:0000005 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF39 |
| UniProt:Q9FGP8 | SUPFAM:SSF47113 | UniParc:UPI00000AB3CC | SEG:seg | : | : |
Description
NFYC7Nuclear transcription factor Y subunit C (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVT1]
Coordinates
chr5:-:20555120..20555758
Molecular Weight (calculated)
23196.5 Da
IEP (calculated)
4.984
GRAVY (calculated)
-0.399
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MEENNGNNNH YLPQPSSSQL PPPPLYYQSM PLPSYSLPLP YSPQMRNYWI AQMGNATDVK HHAFPLTRIK KIMKSNPEVN MVTAEAPVLI SKACEMLILD
101: LTMRSWLHTV EGGRQTLKRS DTLTRSDISA ATTRSFKFTF LGDVVPRDPS VVTDDPVLHP DGEVLPPGTV IGYPVFDCNG VYASPPQMQE WPAVPGDGEE
201: AAGEIGGSSG GN
101: LTMRSWLHTV EGGRQTLKRS DTLTRSDISA ATTRSFKFTF LGDVVPRDPS VVTDDPVLHP DGEVLPPGTV IGYPVFDCNG VYASPPQMQE WPAVPGDGEE
201: AAGEIGGSSG GN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.